miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;AAVX01020289.1/2798-2712 7868:Callorhinchus milii
          (ghost shark)
          Length = 87

 Score =  121 bits (61), Expect = 2e-27
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                      
Query: 17 agctacagctggttgaaggggaccaaatccattcaagaggtgatttggttccattttacc 76
          ||||||||||||||||||||||||||||||||  || || ||||||||||||||||||||
Sbjct: 77 agctacagctggttgaaggggaccaaatccatagaatagttgatttggttccattttacc 18

                           
Query: 77 agctttagcaaagcatt 93
          |||||||||||||||||
Sbjct: 17 agctttagcaaagcatt 1




>RF00446;mir-133;AAQQ01431588.1/1752-1838 43179:Spermophilus
          tridecemlineatus (thirteen-lined ground squirrel)
          Length = 87

 Score = 89.7 bits (45), Expect = 6e-18
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                      
Query: 17 agctacagctggttgaaggggaccaaatccattcaagaggtgatttggttccattttacc 76
          ||||||||||||||||||||||||||||||| | |  ||  ||||||||||||||| |||
Sbjct: 77 agctacagctggttgaaggggaccaaatccagtgagcagccgatttggttccatttgacc 18

                           
Query: 77 agctttagcaaagcatt 93
          ||||| |||||||||||
Sbjct: 17 agcttcagcaaagcatt 1




>RF00446;mir-133;AAIY01559715.1/853-939 9371:Echinops telfairi
          (small Madagascar hedgehog)
          Length = 87

 Score = 79.8 bits (40), Expect = 6e-15
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                      
Query: 17 agctacagctggttgaaggggaccaaatccattcaagaggtgatttggttccattttacc 76
          ||||||||||||||||||||||||||||||||   |  |  ||| |||||||||||||||
Sbjct: 77 agctacagctggttgaaggggaccaaatccatcatacggccgatctggttccattttacc 18

                          
Query: 77 agctttagcaaagcat 92
          |||| |||||||||||
Sbjct: 17 agctctagcaaagcat 2




>RF00446;mir-133;CAAE01007044.1/175-261 99883:Tetraodon
          nigroviridis
          Length = 87

 Score = 65.9 bits (33), Expect = 9e-11
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                      
Query: 25 ctggttgaaggggaccaaatccattcaagaggtgatttggttccattttaccagctttag 84
          |||||||||||||||||||||||  ||  ||| ||| ||||||||||| |||||||  ||
Sbjct: 69 ctggttgaaggggaccaaatccagacagaaggagatctggttccatttgaccagctgcag 10

                   
Query: 85 caaagcatt 93
          |||||||||
Sbjct: 9  caaagcatt 1




>RF00446;mir-133;AAVX01266048.1/613-699 7868:Callorhinchus milii
          (ghost shark)
          Length = 87

 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                        
Query: 17 agctacagctggttgaaggggaccaaatcc 46
          ||||||||||||||||||||||||||||||
Sbjct: 77 agctacagctggttgaaggggaccaaatcc 48




>RF00446;mir-133;ABKQ02016003.1/5336-5232 377270:Anopheles gambiae
          S
          Length = 105

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                           
Query: 18 gctacagctggttgaaggggaccaaatccattc 50
          ||||||||||||||||||||||||||| |||||
Sbjct: 94 gctacagctggttgaaggggaccaaatgcattc 62




>RF00446;mir-133;AAWZ01040028.1/1304-1218 28377:Anolis
          carolinensis (green anole)
          Length = 87

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                     
Query: 21 acagctggttgaaggggaccaaatcca 47
          |||||||||||||||||||||||||||
Sbjct: 73 acagctggttgaaggggaccaaatcca 47




>RF00446;mir-133;ABLF01021874.1/5675-5746 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 72

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                     
Query: 18 gctacagctggttgaaggggaccaaat 44
          |||||||||||||||||||||||||||
Sbjct: 61 gctacagctggttgaaggggaccaaat 35




>RF00446;mir-133;AAGE02024522.1/50344-50238 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 107

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                     
Query: 18 gctacagctggttgaaggggaccaaat 44
          |||||||||||||||||||||||||||
Sbjct: 96 gctacagctggttgaaggggaccaaat 70




>RF00446;mir-133;AAPP01015693.1/86515-86606 7217:Drosophila
          ananassae
          Length = 92

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                     
Query: 18 gctacagctggttgaaggggaccaaat 44
          |||||||||||||||||||||||||||
Sbjct: 81 gctacagctggttgaaggggaccaaat 55




>RF00446;mir-133;AAQB01006401.1/332784-332872 7260:Drosophila
          willistoni
          Length = 89

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                     
Query: 18 gctacagctggttgaaggggaccaaat 44
          |||||||||||||||||||||||||||
Sbjct: 78 gctacagctggttgaaggggaccaaat 52




>RF00446;mir-133;AASW01052175.1/117-202 7240:Drosophila simulans
          Length = 86

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                     
Query: 18 gctacagctggttgaaggggaccaaat 44
          |||||||||||||||||||||||||||
Sbjct: 75 gctacagctggttgaaggggaccaaat 49




>RF00446;mir-133;AAPT01020977.1/40333-40419 7222:Drosophila
          grimshawi
          Length = 87

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                     
Query: 18 gctacagctggttgaaggggaccaaat 44
          |||||||||||||||||||||||||||
Sbjct: 76 gctacagctggttgaaggggaccaaat 50




>RF00446;mir-133;AAPU01010689.1/170290-170375 7230:Drosophila
          mojavensis
          Length = 86

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                     
Query: 18 gctacagctggttgaaggggaccaaat 44
          |||||||||||||||||||||||||||
Sbjct: 75 gctacagctggttgaaggggaccaaat 49




>RF00446;mir-133;AADN02043827.1/38919-38834 9031:Gallus gallus
          (chicken)
          Length = 86

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                    
Query: 22 cagctggttgaaggggaccaaatcca 47
          ||||||||||||||||||||||||||
Sbjct: 71 cagctggttgaaggggaccaaatcca 46




>RF00446;mir-133;AAZO01007144.1/88847-88936 121224:Pediculus
          humanus corporis (human body louse)
          Length = 90

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                    
Query: 19 ctacagctggttgaaggggaccaaat 44
          ||||||||||||||||||||||||||
Sbjct: 78 ctacagctggttgaaggggaccaaat 53




>RF00446;mir-133;BABH01010529.1/47109-47021 7091:Bombyx mori
          (domestic silkworm)
          Length = 89

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                    
Query: 19 ctacagctggttgaaggggaccaaat 44
          ||||||||||||||||||||||||||
Sbjct: 77 ctacagctggttgaaggggaccaaat 52




>RF00446;mir-133;AADG05005567.1/35761-35851 7460:Apis mellifera
          (honey bee)
          Length = 91

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                    
Query: 19 ctacagctggttgaaggggaccaaat 44
          ||||||||||||||||||||||||||
Sbjct: 79 ctacagctggttgaaggggaccaaat 54




>RF00446;mir-133;AAGJ02035428.1/18887-18799
          7668:Strongylocentrotus purpuratus
          Length = 89

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                       
Query: 18 gctacagctggttgaaggggaccaaatcc 46
          ||||| |||||||||||||||||||||||
Sbjct: 78 gctacggctggttgaaggggaccaaatcc 50




>RF00446;mir-133;AAFS01007554.1/884-971 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 88

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                   
Query: 20 tacagctggttgaaggggaccaaat 44
          |||||||||||||||||||||||||
Sbjct: 75 tacagctggttgaaggggaccaaat 51




>RF00446;mir-133;AAWU01037751.1/37190-37294 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 105

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 21 acagctggttgaaggggaccaaat 44
          ||||||||||||||||||||||||
Sbjct: 94 acagctggttgaaggggaccaaat 71




>RF00446;mir-133;AAJJ01000046.1/77209-77292 7070:Tribolium
          castaneum (red flour beetle)
          Length = 84

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 21 acagctggttgaaggggaccaaat 44
          ||||||||||||||||||||||||
Sbjct: 70 acagctggttgaaggggaccaaat 47




>RF00446;mir-133;ABJB010482881.1/10984-10878 6945:Ixodes
          scapularis (black-legged tick)
          Length = 107

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 21 acagctggttgaaggggaccaaat 44
          ||||||||||||||||||||||||
Sbjct: 93 acagctggttgaaggggaccaaat 70




>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
          intestinalis
          Length = 92

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 22 cagctggttgaaggggaccaaa 43
          ||||||||||||||||||||||
Sbjct: 77 cagctggttgaaggggaccaaa 56




>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
          (chicken)
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                    
Query: 18 gctacagctggttgaaggggaccaaa 43
          |||| |||||||||||||||||||||
Sbjct: 77 gctatagctggttgaaggggaccaaa 52