miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AANH01002639.1/21280-21198 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 125 bits (63), Expect = 1e-28
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 15 ttgggaaagacagtagattgtatagttatttaaaaaagaggttacaaaaccccacaacta 74
||||||||||||||||||||||||||||| | |||||||||||| | |||||||||||||
Sbjct: 83 ttgggaaagacagtagattgtatagttatctcaaaaagaggttagacaaccccacaacta 24
Query: 75 ttcaatctactacctcagc 93
|||||||||||||||||||
Sbjct: 23 ttcaatctactacctcagc 5
>RF00027;let-7;BAAF04002563.1/3069-3152 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 95.6 bits (48), Expect = 1e-19
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 15 ttgggaaagacagtagattgtatagttatttaaa-aaagaggttacaaaaccccacaact 73
|||||||||||||||||||||||||||| | || |||||||| ||||||||||||||
Sbjct: 84 ttgggaaagacagtagattgtatagttaactgaagaaagaggtcggaaaaccccacaact 25
Query: 74 attcaatctactacctcagc 93
||||||||||||||||||||
Sbjct: 24 attcaatctactacctcagc 5
>RF00027;let-7;ABPM01013261.1/416-335 106582:Maylandia zebra
(zebra mbuna)
Length = 82
Score = 83.8 bits (42), Expect = 4e-16
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 18 ggaaagacagtagattgtatagttatttaaaaaagaggttacaaaaccccacaactattc 77
|||||||||||||||||||||||||| | |||| |||| | ||| ||||||||||||||
Sbjct: 79 ggaaagacagtagattgtatagttatctcaaaaggaggatgtaaa-ccccacaactattc 21
Query: 78 aatctactacctca 91
||||||||||||||
Sbjct: 20 aatctactacctca 7
>RF00027;let-7;CR847944.11/44347-44429 7955:Danio rerio
(zebrafish)
Length = 83
Score = 71.9 bits (36), Expect = 2e-12
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 19 gaaagacagtagattgtatagttatttaaaaaagaggttacaaaaccccacaactattca 78
||||||||||||||||||||||||| | ||| |||||| | | | |||||||||||||
Sbjct: 78 gaaagacagtagattgtatagttatctcaaagggaggttttata-ctccacaactattca 20
Query: 79 atctactacctcagct 94
||||||||||||||||
Sbjct: 19 atctactacctcagct 4
>RF00027;let-7;BAAF04096587.1/14346-14265 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 71.9 bits (36), Expect = 2e-12
Identities = 67/75 (89%), Gaps = 3/75 (4%)
Strand = Plus / Minus
Query: 18 ggaaagacagtagattgtatagttatttaaaaaagaggttacaa-aaccccacaactatt 76
|||||||||||||| ||||||||||| | |||| |||| ||| |||||||||||||||
Sbjct: 79 ggaaagacagtagactgtatagttatctcaaaaggagg--acatgaaccccacaactatt 22
Query: 77 caatctactacctca 91
|||||||||||||||
Sbjct: 21 caatctactacctca 7
>RF00027;let-7;CAAB01006742.1/7725-7806 31033:Takifugu rubripes
Length = 82
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 61 aaaccccacaactattcaatctactacctcagc 93
|||||||||||||||||||||||||||||||||
Sbjct: 37 aaaccccacaactattcaatctactacctcagc 5
>RF00027;let-7;AAPN01367903.1/288-368 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 63 accccacaactattcaatctactacctcagc 93
|||||||||||||||||||||||||||||||
Sbjct: 35 accccacaactattcaatctactacctcagc 5
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 18 ggaaagacagtagattgtatagtta 42
|||||||||||||||||||||||||
Sbjct: 78 ggaaagacagtagattgtatagtta 54
>RF00027;let-7;CR936540.12/43970-44052 7955:Danio rerio
(zebrafish)
Length = 83
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 66 ccacaactattcaatctactacctcagc 93
||||||||||||||||||||||||||||
Sbjct: 32 ccacaactattcaatctactacctcagc 5
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 18 ggaaagacagtagattgtatagttat 43
||||||||||||||||||||||||||
Sbjct: 80 ggaaagacagtagattgtatagttat 55
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 18 ggaaagacagtagattgtatagttat 43
||||||||||||||||||||||||||
Sbjct: 76 ggaaagacagtagattgtatagttat 51
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 18 ggaaagacagtagattgtatagttat 43
||||||||||||||||||||||||||
Sbjct: 78 ggaaagacagtagattgtatagttat 53
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 18 ggaaagacagtagattgtatagttat 43
||||||||||||||||||||||||||
Sbjct: 78 ggaaagacagtagattgtatagttat 53
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 18 ggaaagacagtagattgtatagtta 42
|||||||||||||||||||||||||
Sbjct: 75 ggaaagacagtagattgtatagtta 51
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 19 gaaagacagtagattgtatagttat 43
|||||||||||||||||||||||||
Sbjct: 77 gaaagacagtagattgtatagttat 53
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 16 tgggaaagacagtagattgtatagttat 43
|||||||||||||||| |||||||||||
Sbjct: 80 tgggaaagacagtagactgtatagttat 53
>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 62 aaccccacaactattcaatctactacctcagc 93
|||| ||||||||| |||||||||||||||||
Sbjct: 36 aacctcacaactatacaatctactacctcagc 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 18 ggaaagacagtagattgtatagttat 43
||||||||||||||||| ||||||||
Sbjct: 78 ggaaagacagtagattgcatagttat 53
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 17 gggaaagacagtagattgtatagttat 43
||||||||||||||| |||||||||||
Sbjct: 81 gggaaagacagtagactgtatagttat 55
