miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;AANH01002669.1/122646-122735 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 157 bits (79), Expect = 3e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 ggtgtttctctggcagtgtcttagctggttgttgtgaggagtgagaacgaagcaatcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggtgtttctctggcagtgtcttagctggttgttgtgaggagtgagaacgaagcaatcagc 63
Query: 61 aagtatactgccgcagaaa 79
|||||||||||||||||||
Sbjct: 64 aagtatactgccgcagaaa 82
>RF00456;mir-34;AAVX01252978.1/732-820 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 109 bits (55), Expect = 5e-24
Identities = 74/79 (93%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 2 gtgtttctctggcagtgtcttagctggttgttgtgaggagtgagaacgaagcaatcagca 61
||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||
Sbjct: 5 gtgtttctctggcagtgtcttagctggttgttgtgtgcagtcagaa-aaagcaatcagca 63
Query: 62 agtatactgccgcagaaat 80
|||||||||||||||||||
Sbjct: 64 agtatactgccgcagaaat 82
>RF00456;mir-34;AADN02040793.1/20235-20325 9031:Gallus gallus
(chicken)
Length = 91
Score = 79.8 bits (40), Expect = 5e-15
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 2 gtgtttctctggcagtgtcttagctggttgttgtgaggagt-gagaacgaagcaatcagc 60
|||||||| |||||||||||||||||||||||||||| | | | || ||||||||||||
Sbjct: 5 gtgtttctttggcagtgtcttagctggttgttgtgagcaatagttaaggaagcaatcagc 64
Query: 61 aagtatactgcc 72
||||||||||||
Sbjct: 65 aagtatactgcc 76
