miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AANH01009874.1/6075-5997 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 133 bits (67), Expect = 5e-31
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 15 ctatatctaccctgtagatccggatttgtgtaaaaatcattaatacaatcacaaattcgc 74
|||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct: 1 ctatatctaccctgtagatccggatttgtgtagaaatcattaaaataatcacaaattcgc 60
Query: 75 ttctaggggagtatatagt 93
|||||||||||||||||||
Sbjct: 61 ttctaggggagtatatagt 79
>RF00104;mir-10;AB232920.1/58331-58253 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 93.7 bits (47), Expect = 4e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 15 ctatatctaccctgtagatccggatttgtgtaaaaatcattaatacaatcacaaattcgc 74
||||||||||||||||||||||||||||||| | || | | ||||||||||||||||
Sbjct: 1 ctatatctaccctgtagatccggatttgtgtgacggtcgatgaaacaatcacaaattcgc 60
Query: 75 ttctaggggagtatatagt 93
|||||||||||||||||||
Sbjct: 61 ttctaggggagtatatagt 79
>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
(chicken)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 15 ctatatctaccctgtagatccggatttgtgtaaa 48
|||||| ||||||||||||||| |||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgtaaa 34
>RF00104;mir-10;EF594314.1/41875-41950 8153:Haplochromis burtoni
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 15 ctatatctaccctgtagatccggatttgtgtaaa 48
||||||| |||||||||||||| |||||||||||
Sbjct: 1 ctatatccaccctgtagatccgaatttgtgtaaa 34
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 15 ctatatctaccctgtagatccggatttgtgtaaaaa 50
|||||| ||||||||||||||| |||||||| ||||
Sbjct: 1 ctatatataccctgtagatccgaatttgtgtgaaaa 36
>RF00104;mir-10;AAWZ01028329.1/91871-91943 28377:Anolis
carolinensis (green anole)
Length = 73
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 60 caatcacaaattcgcttctaggggagtatat 90
|||||||||||||| |||||||||||||||
Sbjct: 40 caatcacaaattcgtctctaggggagtatat 70
>RF00104;mir-10;BAAE01096977.1/80-154 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 60 caatcacaaattcgcttctaggggagtatat 90
|||||||| ||||| ||||||||||||||||
Sbjct: 42 caatcacagattcgattctaggggagtatat 72
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 15 ctatatctaccctgtagatccggatttgtgt 45
|||||| ||||||||||||||| ||||||||
Sbjct: 1 ctatatataccctgtagatccgaatttgtgt 31
>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
floridae (Florida lancelet)
Length = 75
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 15 ctatatctaccctgtagatccggatttgtgt 45
|||||| ||||||||||||||| ||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgt 31
>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 taccctgtagatccggatttgtgtaa 47
||||||||||||||| ||||||||||
Sbjct: 8 taccctgtagatccgaatttgtgtaa 33
>RF00104;mir-10;FJ497007.1/255336-255410 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 61 aatcacaaattcgcttctaggggagtatat 90
||||||||||||| |||||||||||||||
Sbjct: 43 aatcacaaattcgtctctaggggagtatat 72
>RF00104;mir-10;CAAB01000183.1/83579-83654 31033:Takifugu rubripes
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 23 accctgtagatccggatttgtgtaaa 48
|||||||||||||| |||||||||||
Sbjct: 9 accctgtagatccgaatttgtgtaaa 34
