miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;CAAB01000076.1/26328-26242 31033:Takifugu rubripes
Length = 87
Score = 129 bits (65), Expect = 6e-30
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 4 tgaggtagtagtttgtgctgttggtcgggttgtcatattaccccttgtggagatgactgc 63
|||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 7 tgaggtagtattttgtgctgttggtcgggttgtcctattgccccttgtggagatgactgc 66
Query: 64 gcaatctactgccttgc 80
|||||||||||||||||
Sbjct: 67 gcaatctactgccttgc 83
>RF00027;let-7;AANH01007768.1/28424-28513 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 119 bits (60), Expect = 6e-27
Identities = 73/76 (96%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagtagtttgtgctgttggtcgggttgtcatattacccc-ttgtggagatgactg 62
||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct: 7 tgaggtagtagtttgtgctgttggtcgggttgtcatattgccccgttttggagatgactg 66
Query: 63 cgcaatctactgcctt 78
||||||||||||||||
Sbjct: 67 cgcaatctactgcctt 82
>RF00027;let-7;BAAE01140557.1/855-941 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 91.7 bits (46), Expect = 1e-18
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 4 tgaggtagtagtttgtgctgttggtcgggttgtcatattaccccttgtggagatgactgc 63
|||||||||||||||||||||||||||||| ||| | | ||||| ||||| |||||||
Sbjct: 7 tgaggtagtagtttgtgctgttggtcgggtcgtcgtgctgcccctgatggaggtgactgc 66
Query: 64 gcaatctactgccttgcc 81
||||||||||||||||||
Sbjct: 67 gcaatctactgccttgcc 84
>RF00027;let-7;BAAF04117990.1/808-722 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 83.8 bits (42), Expect = 3e-16
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 4 tgaggtagtagtttgtgctgttggtcgggttgtcatattaccccttgtggagatgactgc 63
|||||||||||||||||||||||||||||| ||| | | |||| ||||| |||||||
Sbjct: 7 tgaggtagtagtttgtgctgttggtcgggtcgtcgtgctgcccccgatggaggtgactgc 66
Query: 64 gcaatctactgccttgcc 81
||||||||||||||||||
Sbjct: 67 gcaatctactgccttgcc 84
>RF00027;let-7;BAAF04035801.1/1686-1772 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 73.8 bits (37), Expect = 3e-13
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 4 tgaggtagtagtttgtgctgttggtcgggttgtcatattaccccttgtggagatgactgc 63
||||||||||||||||||||||||| |||||| | | | ||| | |||||||||||||
Sbjct: 7 tgaggtagtagtttgtgctgttggttgggttgagacactgcccgctatggagatgactgc 66
Query: 64 gcaatctactgccttgc 80
|||| ||||||||||||
Sbjct: 67 gcaagctactgccttgc 83
