miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00076;mir-181;ABQF01033784.1/94537-94612 59729:Taeniopygia
guttata
Length = 76
Score = 151 bits (76), Expect = 2e-36
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 4 cttcagtgaacattcaacgctgtcggtgagtttggaattaaagtgaaaaccatcgaccgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttggaattaaagtgaaaaccatcgaccgt 60
Query: 64 tgattgtaccctccag 79
||||||||||||||||
Sbjct: 61 tgattgtaccctccag 76
>RF00076;mir-181;AAWZ01041904.1/21191-21117 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 83.8 bits (42), Expect = 3e-16
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 4 cttcagtgaacattcaacgctgtcggtgagtttggaattaaagtgaaaaccatcgaccgt 63
|||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttggaatcga-gagcaaaccatcgaccgt 59
Query: 64 tgattgtacc 73
||| ||||||
Sbjct: 60 tgactgtacc 69
>RF00076;mir-181;AAVX01524458.1/119-46 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 4 cttcagtgaacattcaacgctgtcggtgagtttggaattaaagtgaaaaccatcgaccgt 63
||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttgggatttagatg--aaccatcgaccgt 58
Query: 64 tgattgtaccct 75
||| ||||||||
Sbjct: 59 tgactgtaccct 70
>RF00076;mir-181;AADN02026326.1/5940-5866 9031:Gallus gallus
(chicken)
Length = 75
Score = 71.9 bits (36), Expect = 1e-12
Identities = 64/71 (90%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 4 cttcagtgaacattcaacgctgtcggtgagtttg-gaattaaagtgaaaaccatcgaccg 62
|||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttgagaactaa--gaaaaaccatcgaccg 58
Query: 63 ttgattgtacc 73
|||| ||||||
Sbjct: 59 ttgactgtacc 69
>RF00076;mir-181;CAAK05046427.1/2246-2169 7955:Danio rerio
(zebrafish)
Length = 78
Score = 69.9 bits (35), Expect = 5e-12
Identities = 65/73 (89%), Gaps = 4/73 (5%)
Strand = Plus / Plus
Query: 6 tcagtgaacattcaacgctgtcggtgagtttggaattaaagtg---aaaaccatcgaccg 62
||||||||||||||||||||||||||||||| || |||| | ||||||||||||||
Sbjct: 3 tcagtgaacattcaacgctgtcggtgagttt-gagctaaatggaaaaaaaccatcgaccg 61
Query: 63 ttgattgtaccct 75
|||||||||||||
Sbjct: 62 ttgattgtaccct 74
>RF00076;mir-181;AAVX01060902.1/6914-6990 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 4 cttcagtgaacattcaacgctgtcggtgagtttg 37
||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAFR03041358.1/50589-50664 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 76
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 4 cttcagtgaacattcaacgctgtcggtgagttt 36
|||||||||||||||||||||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;ABRO01503714.1/705-629 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 77
Score = 63.9 bits (32), Expect = 3e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 11 gaacattcaacgctgtcggtgagttt-ggaattaaagtgaaaaccatcgaccgttgattg 69
|||||||||||||||||||||||||| ||||||||| |||||| |||||||||| ||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgggaattaaaaaagaaaccaccgaccgttgactg 67
Query: 70 tacc 73
||||
Sbjct: 68 tacc 71
>RF00076;mir-181;BAAE01064819.1/183-106 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 63.9 bits (32), Expect = 3e-10
Identities = 62/70 (88%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 9 gtgaacattcaacgctgtcggtgagtttggaattaaagt---gaaaaccatcgaccgttg 65
|||||||||||||||||||||||||||| || |||| | ||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagttt-gagctaaattgaagaaaaccatcgaccgttg 64
Query: 66 attgtaccct 75
| ||||||||
Sbjct: 65 actgtaccct 74
>RF00076;mir-181;AANH01003633.1/162880-162804 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 7 cagtgaacattcaacgctgtcggtgagttt 36
||||||||||||||||||||||||||||||
Sbjct: 4 cagtgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;ABRQ01199017.1/7675-7601 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 tgaacattcaacgctgtcggtgagtttgg 38
|||||||||||||||||||||||||||||
Sbjct: 8 tgaacattcaacgctgtcggtgagtttgg 36
>RF00076;mir-181;CAAE01007899.1/3116-3043 99883:Tetraodon
nigroviridis
Length = 74
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 9 gtgaacattcaacgctgtcggtgagtttg 37
|||||||||||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AANH01010005.1/225761-225835 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 9 gtgaacattcaacgctgtcggtgagtttg 37
|||||||||||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;BAAE01046132.1/387-313 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 11 gaacattcaacgctgtcggtgagtttggaattaaagtgaaaaccatcgaccgttgattgt 70
|||||||||||||||||||||||||| | || | | |||||||||||||||||| |||
Sbjct: 8 gaacattcaacgctgtcggtgagttt-gtgctacaatcaaaaccatcgaccgttgactgt 66
Query: 71 accct 75
|||||
Sbjct: 67 accct 71
>RF00076;mir-181;AAVX01605662.1/457-382 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 5 ttcagtgaacattcaacgctgtcggtgagtttg 37
||||| |||||||||||||||||||||||||||
Sbjct: 2 ttcagggaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAPN01204145.1/856-780 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 gaacattcaacgctgtcggtgagtttgg 38
||||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;ABRR01288494.1/77-2 30538:Lama pacos (alpaca)
Length = 76
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 gaacattcaacgctgtcggtgagtttgg 38
||||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;BX649502.4/41327-41254 7955:Danio rerio
(zebrafish)
Length = 74
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 tcagtgaacattcaacgctgtcggtgagtttg 37
|||| |||||||||||||||||||||||||||
Sbjct: 3 tcagagaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;CU914488.12/799-875 7955:Danio rerio (zebrafish)
Length = 77
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 9 gtgaacattcaacgctgtcggtgagttt 36
||||||||||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAE01007782.1/1794-1718 99883:Tetraodon
nigroviridis
Length = 77
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 gaacattcaacgctgtcggtgagtttgg 38
||||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;AANH01005494.1/52551-52630 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 9 gtgaacattcaacgctgtcggtgagttt 36
||||||||||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AAPN01414527.1/5237-5163 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 gaacattcaacgctgtcggtgagtttg 37
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;ABQO010301058.1/1056-1132 9315:Macropus eugenii
(tammar wallaby)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 gaacattcaacgctgtcggtgagtttg 37
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;ABPN01054789.1/181-255 163638:Rhamphochromis esox
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 gaacattcaacgctgtcggtgagtttg 37
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AANH01011358.1/4650-4577 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 gaacattcaacgctgtcggtgagtttg 37
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;BAAE01247698.1/2692-2765 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 gaacattcaacgctgtcggtgagtttg 37
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;BAAE01266276.1/154-232 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 12 aacattcaacgctgtcggtgagtttgg 38
|||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;CR407590.7/46720-46647 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 gaacattcaacgctgtcggtgagttt 36
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01002581.1/17658-17586 31033:Takifugu
rubripes
Length = 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 gaacattcaacgctgtcggtgagttt 36
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AAWZ01014044.1/10482-10407 28377:Anolis
carolinensis (green anole)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 aacattcaacgctgtcggtgagttt 36
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01009059.1/35-115 31033:Takifugu rubripes
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 aacattcaacgctgtcggtgagttt 36
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01002295.1/30499-30571 31033:Takifugu
rubripes
Length = 73
Score = 50.1 bits (25), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 gaacattcaacgctgtcggtgagtttg 37
|||||||||| ||||||||||||||||
Sbjct: 8 gaacattcaamgctgtcggtgagtttg 34
>RF00076;mir-181;AAIY01317332.1/8-77 9371:Echinops telfairi (small
Madagascar hedgehog)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 6 tcagtgaacattcaacgctgtcggtgagtt 35
||||||||||| ||||||||||||||||||
Sbjct: 3 tcagtgaacat-caacgctgtcggtgagtt 31
