miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 131 bits (66), Expect = 2e-30
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 15 aatctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 74
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
Query: 75 ctgctacatt 84
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;ABQO010540357.1/344-413 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 21 gtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgcta 80
|||||| |||||||||||| ||| |||||||||| |||||||| ||| |||||||||||
Sbjct: 7 gtggaaacatttctgcacacactatactactgaaaccagtgtgcagaagtgcttctgcta 66
Query: 81 catt 84
||||
Sbjct: 67 catt 70
>RF00693;mir-147;AAFR03008278.1/59401-59332 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 15 aatctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 74
||||||| ||| ||| |||||| ||||| ||||||||||| |||||||| ||| |||||
Sbjct: 1 aatctagctgaaacatctctgcataaactagactactgaaaccagtgtgcagaagtgctt 60
Query: 75 ctgctacatt 84
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;AAFR03018157.1/212021-212090 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 65.9 bits (33), Expect = 9e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 16 atctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttc 75
||||||||||| ||| |||||||||||| ||||||| ||| ||||||| ||| |||||
Sbjct: 2 atctagtggaaacatctctgcacaaactagactactaaaaccagtgtgtagaagggcttc 61
Query: 76 tgctacatt 84
|||||||||
Sbjct: 62 tgctacatt 70
>RF00693;mir-147;AAWR02019028.1/76654-76723 9796:Equus caballus
(horse)
Length = 70
Score = 60.0 bits (30), Expect = 6e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 31 ttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgctacatt 84
||||||||||||| || || || |||||||||| |||||||||||||||||||
Sbjct: 17 ttctgcacaaactggagtatggatatcagtgtgccgaaatgcttctgctacatt 70
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 60.0 bits (30), Expect = 6e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 15 aatctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 74
|||||||||||| || ||||||||||||| || || || | |||||||||||| |||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactagattatggata-cagtgtgcggaagtgctt 59
Query: 75 ctgctacatt 84
||||||||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;AAVX01307041.1/135-202 7868:Callorhinchus milii
(ghost shark)
Length = 68
Score = 60.0 bits (30), Expect = 6e-09
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 23 ggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgctaca 82
||||||||||||||||||||| | ||||| || ||||||||||||||||||||| ||||
Sbjct: 9 ggaatcatttctgcacaaactcgg-tactggaa-cagtgtgcggaaatgcttctggtaca 66
Query: 83 tt 84
||
Sbjct: 67 tt 68
>RF00693;mir-147;AACN010573528.1/732-801 9615:Canis lupus
familiaris (dog)
Length = 70
Score = 56.0 bits (28), Expect = 9e-08
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 17 tctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttct 76
||||| |||| |||||||||||| || ||||| ||||||||| ||| ||||||||||
Sbjct: 3 tctagaggaagcatttctgcacacaccagactattgaaatcagcgtgtggaaatgctttc 62
Query: 77 gctacatt 84
||||||||
Sbjct: 63 gctacatt 70
>RF00693;mir-147;AAHX01006722.1/12190-12258 10116:Rattus
norvegicus (Norway rat)
Length = 69
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 15 aatctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 74
|||||||||||| || ||||||||||||| || | ||| |||||||| |||||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactcgattt-tgatgccagtgtgcagaaatgctt 59
Query: 75 ctgctacatt 84
||||||||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;AAKN02005203.1/37099-37168 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 50.1 bits (25), Expect = 5e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 28 catttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgctacatt 84
||||||||||||||| ||||| |||| ||||||| || ||||||||||||||||
Sbjct: 14 catttctgcacaaaccagactattgaatccagtgtggggcgatgcttctgctacatt 70
>RF00693;mir-147;AAGW01139212.1/2371-2440 9986:Oryctolagus
cuniculus (rabbit)
Length = 70
Score = 50.1 bits (25), Expect = 5e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 28 catttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgctacatt 84
|||||||||||| || ||||| || || ||||||||||||||||||| | ||||||
Sbjct: 14 catttctgcacacaccagactattgcaagcagtgtgcggaaatgcttccgttacatt 70
>RF00693;mir-147;ABRN01322131.1/5297-5220 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 45 gactactgaaatcagtgtgcggaaatgcttctgctacatt 84
||||| ||||| ||||||| ||||||||||||| ||||||
Sbjct: 39 gactattgaaaccagtgtgtggaaatgcttctgttacatt 78
>RF00693;mir-147;AANU01202048.1/11100-11029 9544:Macaca mulatta
(rhesus monkey)
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 57 cagtgtgcggaaatgcttctgctacatt 84
||||||| ||||||||||||||||||||
Sbjct: 45 cagtgtgtggaaatgcttctgctacatt 72
>RF00693;mir-147;AAYZ01195432.1/14535-14604 9978:Ochotona princeps
(American pika)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 57 cagtgtgcggaaatgcttctgctacatt 84
|||||||||||| |||||||||||||||
Sbjct: 43 cagtgtgcggaagtgcttctgctacatt 70
>RF00693;mir-147;ABPJ01071875.1/477-549 35575:Mchenga conophoros
Length = 73
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tcagtgtgcggaaatgcttctgct 79
||||||||||||||||||||||||
Sbjct: 45 tcagtgtgcggaaatgcttctgct 68
>RF00693;mir-147;BAAF04016950.1/22862-22934 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tcagtgtgcggaaatgcttctgct 79
||||||||||||||||||||||||
Sbjct: 45 tcagtgtgcggaaatgcttctgct 68
>RF00693;mir-147;ACBE01108147.1/7076-7008 9685:Felis catus
(domestic cat)
Length = 69
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 52 gaaatcagtgtgcggaaatgcttctgctaca 82
|||| ||||||| ||||||||||||||||||
Sbjct: 37 gaaaccagtgtgtggaaatgcttctgctaca 67
>RF00693;mir-147;ABQO010681913.1/1802-1733 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 15 aatctagtggaatcatttctgcacaaacttgactactgaaatcagt 60
|||||||||||| |||||||||||| ||| || ||| ||||||||
Sbjct: 1 aatctagtggaaacatttctgcacagactagatcactaaaatcagt 46
>RF00693;mir-147;ABRP01017253.1/4570-4501 132908:Pteropus vampyrus
(large flying fox)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 58 agtgtgcggaaatgcttctgctacat 83
|||||| |||||||||||||||||||
Sbjct: 44 agtgtgtggaaatgcttctgctacat 69
