miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
           trichocarpa
          Length = 155

 Score =  299 bits (151), Expect = 6e-81
 Identities = 154/155 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgc 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgc 60

                                                                       
Query: 68  cagatggctaaacacgattggctgtgaggcaaattataaaaagaaaaagaattggatccc 127
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 61  cagatggctaaacacgattggctgtgaggcaaattataaaaagaaagagaattggatccc 120

                                              
Query: 128 gccttgcatcaactgaatcggagaccgcggtgaag 162
           |||||||||||||||||||||||||||||||||||
Sbjct: 121 gccttgcatcaactgaatcggagaccgcggtgaag 155




>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
          Length = 179

 Score =  129 bits (65), Expect = 1e-29
 Identities = 68/69 (98%)
 Strand = Plus / Plus

                                                                      
Query: 8  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgc 67
          ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ttaccggcggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgc 60

                   
Query: 68 cagatggct 76
          |||||||||
Sbjct: 61 cagatggct 69



 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                          
Query: 116 gaattggatcccgccttgcatcaactgaatcggagaccgcggtgaag 162
           ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 133 gaattggatcccgccttgcatcaactgaatcggaggccgcggtgaag 179




>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
          Length = 76

 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                         
Query: 116 gaattggatcccgccttgcatcaactgaatcggagaccgcggtgaa 161
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30  gaattggatcccgccttgcatcaactgaatcggagaccgcggtgaa 75




>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
          (castor bean)
          Length = 156

 Score = 89.7 bits (45), Expect = 1e-17
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                       
Query: 8  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 52
          |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 45



 Score = 77.8 bits (39), Expect = 4e-14
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                          
Query: 116 gaattggatcccgccttgcatcaactgaatcggagaccgcggtgaag 162
           |||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcgaagaccggggtgaag 156




>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
           (barrel medic)
          Length = 121

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 116 gaattggatcccgccttgcatcaactgaatcggagaccgcggtgaa 161
           ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 75  gaattggatcccgccttgcatcaactgaatcggaggccgcggtgaa 120



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 14 gcggtctctaattcgcttggtgcaggtcgggaac 47
          ||||||||||||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
          bittercress)
          Length = 126

 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 44/45 (97%)
 Strand = Plus / Plus

                                                       
Query: 8  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 52
          ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1  ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 45



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 124 tcccgccttgcatcaactgaatc 146
           |||||||||||||||||||||||
Sbjct: 88  tcccgccttgcatcaactgaatc 110




>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
          Length = 126

 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                       
Query: 8  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 52
          ||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 1  ttaccggcggtctcagattcgcttggtgcaggtcgggaactgatt 45




>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
          Length = 136

 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                       
Query: 8  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 52
          ||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 1  ttaccggcggtctcggattcgcttggtgcaggtcgggaactgatt 45



 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 121 ggatcccgccttgcatcaactgaatcggagaccgcggtgaa 161
           |||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 95  ggatcccgccttgcatcaactgaatcggaggccgaggtgaa 135




>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
          (thale cress)
          Length = 126

 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                       
Query: 8  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 52
          ||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 1  ttaccggcggtctcggattcgcttggtgcaggtcgggaactgatt 45



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 124 tcccgccttgcatcaactgaatcggagaccgcggtgaa 161
           ||||| |||| |||||||||||||||| ||| ||||||
Sbjct: 88  tcccgtcttgtatcaactgaatcggagtccgaggtgaa 125




>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
          Length = 147

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 122 gatcccgccttgcatcaactgaatcggagaccgcggtga 160
           ||||||||||||||||||||||||||||||| |||||||
Sbjct: 107 gatcccgccttgcatcaactgaatcggagacggcggtga 145



 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 16 ggtctctaattcgcttggtgcaggtcgggaac 47
          ||||||||||||||||||||||||||||||||
Sbjct: 9  ggtctctaattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
           bittercress)
          Length = 138

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 116 gaattggatcccgccttgcatcaactgaatcgga 149
           ||||||||||||||||||||||||||||||||||
Sbjct: 91  gaattggatcccgccttgcatcaactgaatcgga 124



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 24 attcgcttggtgcaggtcgggaact 48
          |||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaact 41




>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
          Length = 139

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 118 attggatcccgccttgcatcaactgaatcggag 150
           |||||||||||||||||||||||||||||||||
Sbjct: 93  attggatcccgccttgcatcaactgaatcggag 125



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 24 attcgcttggtgcaggtcgggaact 48
          |||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaact 41




>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
          Length = 139

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 118 attggatcccgccttgcatcaactgaatcggag 150
           |||||||||||||||||||||||||||||||||
Sbjct: 93  attggatcccgccttgcatcaactgaatcggag 125



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 24 attcgcttggtgcaggtcgggaactgatt 52
          |||||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactgatt 45




>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
          Length = 139

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 118 attggatcccgccttgcatcaactgaatcggag 150
           |||||||||||||||||||||||||||||||||
Sbjct: 94  attggatcccgccttgcatcaactgaatcggag 126



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 24 attcgcttggtgcaggtcgggaac 47
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
          Length = 126

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                       
Query: 8  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 52
          ||||||||||| ||  |||||||||||||||||||||||||||||
Sbjct: 1  ttaccggcggtttcggattcgcttggtgcaggtcgggaactgatt 45



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 128 gccttgcatcaactgaatcggagaccgcggtgaa 161
           ||||||||||||||||||||||| ||| ||||||
Sbjct: 92  gccttgcatcaactgaatcggagtccgaggtgaa 125




>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
          Length = 137

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 118 attggatcccgccttgcatcaactgaatcggag 150
           |||||||||||||||||||||||||||||||||
Sbjct: 91  attggatcccgccttgcatcaactgaatcggag 123



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 24 attcgcttggtgcaggtcgggaac 47
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
           cress)
          Length = 142

 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 118 attggatcccgccttgcatcaactgaatcgga 149
           ||||||||||||||||||||||||||||||||
Sbjct: 97  attggatcccgccttgcatcaactgaatcgga 128



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 24 attcgcttggtgcaggtcgggaactgattcggc 56
          ||||||||||||||||||||||||  |||||||
Sbjct: 17 attcgcttggtgcaggtcgggaaccaattcggc 49




>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
          Length = 131

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 24 attcgcttggtgcaggtcgggaactgattc 53
          ||||||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactgattc 46



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 124 tcccgccttgcatcaactgaatcgga 149
           |||||| |||||||||||||||||||
Sbjct: 92  tcccgctttgcatcaactgaatcgga 117




>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
          Length = 136

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 118 attggatcccgccttgcatcaactgaatcggag 150
           ||||| |||||||||||||||||||||||||||
Sbjct: 90  attggctcccgccttgcatcaactgaatcggag 122



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 24 attcgcttggtgcaggtcggga 45
          ||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38




>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
          Length = 136

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 24 attcgcttggtgcaggtcgggaactgatt 52
          |||||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactgatt 45



 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 124 tcccgccttgcatcaactgaatcggag 150
           |||||||||||||||||||||||||||
Sbjct: 98  tcccgccttgcatcaactgaatcggag 124




>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
           pekinensis
          Length = 137

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 118 attggatcccgccttgcatcaactgaatcggag 150
           |||||||||||||||||||||| ||||||||||
Sbjct: 91  attggatcccgccttgcatcaaatgaatcggag 123



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 24 attcgcttggtgcaggtcgggaac 47
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
          Length = 109

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 24 attcgcttggtgcaggtcgggaactgatt 52
          |||||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactgatt 45



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 122 gatcccgccttgcatcaactgaatc 146
           |||||||||||||||||||||||||
Sbjct: 69  gatcccgccttgcatcaactgaatc 93




>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
          (barrel medic)
          Length = 112

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 19 ctctaattcgcttggtgcaggtcgggaac 47
          |||| ||||||||||||||||||||||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaac 40



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 117 aattggatcccgccttgcatcaactgaatcggag 150
           |||||||||| ||||||||||||  |||||||||
Sbjct: 67  aattggatcctgccttgcatcaatcgaatcggag 100




>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
          Length = 102

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
           ||||||||||||||| ||| ||||||||||
Sbjct: 61  ggatcccgccttgcaccaagtgaatcggag 90




>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa Japonica
           Group
          Length = 104

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 121 ggatcccgccttgcatcaactgaatcggag 150
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92