miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 202 bits (102), Expect = 6e-52
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1 gacagatgaagacggggaacaggcagagcatggatggagctactaacagaagtacttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gacagatgaagacggggaacaggcagagcatggatggagctactaacagaagtacttgtt 67
Query: 61 ttggctctacccatgcactgcctcttccctggcttgtggctc 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ttggctctacccatgcactgcctcttccctggcttgtggctc 109
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 95.6 bits (48), Expect = 1e-19
Identities = 79/88 (89%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 9 aagacggggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctc 67
||||| |||||||||||| |||||||||| ||||||||||||| | |||||||||||
Sbjct: 16 aagactgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggctc 75
Query: 68 tacccatgcactgcctcttccctggctt 95
||||| ||||||||||||||||||||||
Sbjct: 76 tacccctgcactgcctcttccctggctt 103
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 57 tgttttggctctacccatgcactgcctcttccctggct 94
|||||| |||||||||||||||||||||||||||||||
Sbjct: 71 tgtttttgctctacccatgcactgcctcttccctggct 108
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 59 ttttggctctacccatgcactgcctcttccctggct 94
||||| ||||||||||||||||||||||||||||||
Sbjct: 73 ttttgtctctacccatgcactgcctcttccctggct 108
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 60.0 bits (30), Expect = 6e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 56 ttgttttggctctacccatgcactgcctcttccctggc 93
||||| ||||||||| ||||||||||||||||||||||
Sbjct: 81 ttgttgtggctctactcatgcactgcctcttccctggc 118
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 gggaacaggcagagcatggatggagcta 42
||||| ||||||||||||||||||||||
Sbjct: 23 gggaagaggcagagcatggatggagcta 50
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 59 ttttggctctacccatgcactgcctcttccctggct 94
|||||| ||||||| |||||||||||||||||||||
Sbjct: 71 ttttggttctacccctgcactgcctcttccctggct 106
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 57 tgttttggctctacccatgcactgcctcttccctggctt 95
|||| |||||| || ||||||||||||||||||||||||
Sbjct: 68 tgttgtggctccactcatgcactgcctcttccctggctt 106
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 catgcactgcctcttccctggct 94
|||||||||||||||||||||||
Sbjct: 117 catgcactgcctcttccctggct 139
