miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01005;MIR530;AC182714.2/17566-17395 3694:Populus trichocarpa
Length = 172
Score = 264 bits (133), Expect = 4e-70
Identities = 165/173 (95%), Gaps = 2/173 (1%)
Strand = Plus / Plus
Query: 10 gccaatatgttgcctt-atctgcatttgcacctgcatcttatgcgttggtttcgtttttg 68
|||||||||||||||| ||||||||||||||||||||||| |||||| |||| |||||||
Sbjct: 1 gccaatatgttgcctttatctgcatttgcacctgcatcttttgcgtttgttttgtttttg 60
Query: 69 actccacaaacaaaatcaagttctgtcgatacagtatgtgggacaatggacatatggaaa 128
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 61 actccacaaacaaaatcaagttctgtcgatacagtatgtgggacaat-tagatatggaaa 119
Query: 129 ctaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccatgttggt 181
||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 120 ctaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 172
>RF01005;MIR530;AARH01003925.1/6653-6796 3694:Populus trichocarpa
Length = 144
Score = 71.9 bits (36), Expect = 3e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 142 ttgaggtgcaggtgcaagtgcaggtgaatgccatgttggt 181
|||||||||||||||| |||||||||||||||||||||||
Sbjct: 105 ttgaggtgcaggtgcaggtgcaggtgaatgccatgttggt 144
Score = 50.1 bits (25), Expect = 1e-05
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 10 gccaatatgttgcctt-atctgcatttgcacctgcatctta 49
||||| |||||||||| ||||||||||||||||||| ||||
Sbjct: 1 gccaacatgttgcctttatctgcatttgcacctgcacctta 41
>RF01005;MIR530;AASG02002502.1/29848-29672 3988:Ricinus communis
(castor bean)
Length = 177
Score = 58.0 bits (29), Expect = 5e-08
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 10 gccaatatgttgcctt-atctgcatttgcacctgcatctta 49
|||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 1 gccaatatgttgcctttatctgcatttgcacctgcacctta 41
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 145 aggtgcaggtgcaagtgcaggtgaatgccatgttggt 181
||||||||||| |||||||||||||||||| |||||
Sbjct: 141 aggtgcaggtgtgagtgcaggtgaatgccattttggt 177
>RF01005;MIR530;BABK01011395.1/470-304 34305:Lotus japonicus
Length = 167
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 10 gccaatatgttgccttatctgcatttgcacctgca 44
||||||||||| | |||||||||||||||||||||
Sbjct: 1 gccaatatgttcctttatctgcatttgcacctgca 35
>RF01005;MIR530;BABK01011395.1/314-467 34305:Lotus japonicus
Length = 154
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 13 aatatgttgccttatctgcatttgcacctgca 44
|||||||| | |||||||||||||||||||||
Sbjct: 154 aatatgttcctttatctgcatttgcacctgca 123
>RF01005;MIR530;ABIM01000670.1/18536-18381 3649:Carica papaya
(papaya)
Length = 156
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 24 ttatctgcatttgcacctgcatcttat 50
||||||||||||||||||||| |||||
Sbjct: 16 ttatctgcatttgcacctgcaccttat 42
>RF01005;MIR530;CAAP02000356.1/124211-124051 29760:Vitis vinifera
Length = 161
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 24 ttatctgcatttgcacctgcatcttat 50
||||||||||||||||||||| |||||
Sbjct: 16 ttatctgcatttgcacctgcaccttat 42
