miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AARH01003279.1/141842-141699 3694:Populus
trichocarpa
Length = 144
Score = 285 bits (144), Expect = 1e-76
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 14 gttggaaggaatgaagcctggtccgagaatcatcgaggtacaagatacacacagactttg 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gttggaaggaatgaagcctggtccgagaatcatcgaggtacaagatacacacagactttg 85
Query: 74 aattttctcggctgtcatcaggtaatgccatgtctgtataatcatggcctcaatgacctc 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 aattttctcggctgtcatcaggtaatgccatgtctgtataatcatggcctcaatgacctc 25
Query: 134 gagccagacaacattcctctcaac 157
||||||||||||||||||||||||
Sbjct: 24 gagccagacaacattcctctcaac 1
>RF00075;mir-166;AC216447.1/33715-33853 3694:Populus trichocarpa
Length = 139
Score = 93.7 bits (47), Expect = 7e-19
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 83 ggctgtcatcaggtaatgccatgtctgtataatcatggcctcaatgacctcgagccagac 142
|||||||||||| ||||||||| | ||||||||||||||||| |||||||||| ||||||
Sbjct: 75 ggctgtcatcagataatgccatttatgtataatcatggcctccatgacctcgacccagac 16
Query: 143 aacattcctctcaac 157
| | |||||||||||
Sbjct: 15 agcgttcctctcaac 1
>RF00075;mir-166;ABIM01027778.1/13122-13246 3649:Carica papaya
(papaya)
Length = 125
Score = 65.9 bits (33), Expect = 2e-10
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 121 cctcaatgacctcgagccagacaacattcctctcaac 157
|||| ||||||||||||||||||||||||||||||||
Sbjct: 37 cctccatgacctcgagccagacaacattcctctcaac 1
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 21 ggaatgaagcctggtccgagaatcat 46
||||||||||||||||||||||||||
Sbjct: 118 ggaatgaagcctggtccgagaatcat 93
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 129 acctcgagccagacaacattcctctcaac 157
|||||||||||||||||||||||||||||
Sbjct: 29 acctcgagccagacaacattcctctcaac 1
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 21 ggaatgaagcctggtccgagaatca 45
|||||||||||||||||||||||||
Sbjct: 150 ggaatgaagcctggtccgagaatca 126
>RF00075;mir-166;AL590346.1/40100-40217 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 126 atgacctcgagccagacaacattcctctcaac 157
||||||||||||||||||||| ||||||||||
Sbjct: 32 atgacctcgagccagacaacaatcctctcaac 1
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 21 ggaatgaagcctggtccgagaatcatc 47
|||||||||||||||||||||||||||
Sbjct: 111 ggaatgaagcctggtccgagaatcatc 85
>RF00075;mir-166;EU548871.1/183-293 3702:Arabidopsis thaliana (thale
cress)
Length = 111
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 126 atgacctcgagccagacaacattcctctcaac 157
||||||||||||||||||| ||||||||||||
Sbjct: 32 atgacctcgagccagacaatattcctctcaac 1
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 21 ggaatgaagcctggtccgagaatcat 46
||||||||||||||||||||||||||
Sbjct: 104 ggaatgaagcctggtccgagaatcat 79
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 127 tgacctcgagccagacaacattcctctcaac 157
|||||||||||||||||||||||| ||||||
Sbjct: 31 tgacctcgagccagacaacattcccctcaac 1
>RF00075;mir-166;AC189313.2/128870-128784 51351:Brassica rapa subsp.
pekinensis
Length = 87
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 126 atgacctcgagccagacaacattcctctca 155
||||||||||||||||||||| ||||||||
Sbjct: 32 atgacctcgagccagacaacagtcctctca 3
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 21 ggaatgaagcctggtccgagaatcat 46
||||||||||||||||||||||||||
Sbjct: 80 ggaatgaagcctggtccgagaatcat 55
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 21 ggaatgaagcctggtccgagaatcat 46
||||||||||||||||||||||||||
Sbjct: 93 ggaatgaagcctggtccgagaatcat 68
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 126 atgacctcgagccagacaacattcctct 153
|||||||||||||| |||||||||||||
Sbjct: 32 atgacctcgagccaaacaacattcctct 5
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 127 tgacctcgagccagacaacattcctctcaa 156
|||||||||||||||||||||||| |||||
Sbjct: 31 tgacctcgagccagacaacattcccctcaa 2
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 127 tgacctcgagccagacaacattcctctcaa 156
|||||||||||||||||||||||| |||||
Sbjct: 31 tgacctcgagccagacaacattcccctcaa 2
>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 129 acctcgagccagacaacattcctctcaac 157
||||||||||||||||| |||||||||||
Sbjct: 29 acctcgagccagacaacgttcctctcaac 1
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 127 tgacctcgagccagacaacattcctctca 155
|||||||||||||||||||||||| ||||
Sbjct: 29 tgacctcgagccagacaacattcccctca 1
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 126 atgacctcgagccagacaacattcc 150
|||||||||||||||||||||||||
Sbjct: 32 atgacctcgagccagacaacattcc 8
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 125 aatgacctcgagccagacaacattcctctcaa 156
|||| ||||||||||||||||||||| |||||
Sbjct: 33 aatgtcctcgagccagacaacattcccctcaa 2
>RF00075;mir-166;AC155889.2/42101-41932 3880:Medicago truncatula
(barrel medic)
Length = 170
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 14 gttggaaggaatgaagcctggtccgaga 41
||||| ||||||||||||||||||||||
Sbjct: 170 gttggtaggaatgaagcctggtccgaga 143
>RF00075;mir-166;CT009488.4/103389-103285 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 20 aggaatgaagcctggtccgagaat 43
||||||||||||||||||||||||
Sbjct: 99 aggaatgaagcctggtccgagaat 76
>RF00075;mir-166;AY664417.1/307265-307178 4577:Zea mays
Length = 88
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 14 gttggaaggaatgaagcctggtccgaga 41
||||| ||||||||||||||||||||||
Sbjct: 88 gttgggaggaatgaagcctggtccgaga 61
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 129 acctcgagccagacaacattcctctcaa 156
|||||||||||||||||||||| |||||
Sbjct: 29 acctcgagccagacaacattcccctcaa 2
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 129 acctcgagccagacaacattcctctcaa 156
|||||||||||||||||||||| |||||
Sbjct: 29 acctcgagccagacaacattcccctcaa 2
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 129 acctcgagccagacaacattcctctcaa 156
|||||||||||||||||||||| |||||
Sbjct: 29 acctcgagccagacaacattcccctcaa 2
>RF00075;mir-166;AARH01005662.1/95261-95577 3694:Populus trichocarpa
Length = 317
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 19 aaggaatgaagcctggtccgaga 41
|||||||||||||||||||||||
Sbjct: 312 aaggaatgaagcctggtccgaga 290
>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus trichocarpa
Length = 324
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 19 aaggaatgaagcctggtccgaga 41
|||||||||||||||||||||||
Sbjct: 319 aaggaatgaagcctggtccgaga 297
>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
trichocarpa
Length = 134
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 130 cctcgagccagacaacattcctctcaa 156
||||||||||||||||||||| |||||
Sbjct: 28 cctcgagccagacaacattcccctcaa 2
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus trichocarpa
Length = 125
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 130 cctcgagccagacaacattcctctcaa 156
||||||||||||||||||||| |||||
Sbjct: 28 cctcgagccagacaacattcccctcaa 2
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 130 cctcgagccagacaacattcctctcaa 156
||||||||||||||||||||| |||||
Sbjct: 28 cctcgagccagacaacattcccctcaa 2
>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
(barrel medic)
Length = 107
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 130 cctcgagccagacaacattcctctcaa 156
||||||||||||||||||||| |||||
Sbjct: 28 cctcgagccagacaacattcccctcaa 2
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 21 ggaatgaagcctggtccgagaat 43
|||||||||||||||||||||||
Sbjct: 100 ggaatgaagcctggtccgagaat 78
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 130 cctcgagccagacaacattcctctcaa 156
||||||||||||||||||||| |||||
Sbjct: 28 cctcgagccagacaacattcccctcaa 2
>RF00075;mir-166;BABK01014008.1/1327-1223 34305:Lotus japonicus
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 129 acctcgagccagacaacattcctctca 155
||||||||||||||||| |||||||||
Sbjct: 29 acctcgagccagacaacgttcctctca 3
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 130 cctcgagccagacaacattcctctcaa 156
||||||||||||||||||||| |||||
Sbjct: 28 cctcgagccagacaacattcccctcaa 2
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 130 cctcgagccagacaacattcctctcaa 156
||||||||||||||||||||| |||||
Sbjct: 28 cctcgagccagacaacattcccctcaa 2
>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
cotton)
Length = 113
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 20 aggaatgaagcctggtccgaga 41
||||||||||||||||||||||
Sbjct: 107 aggaatgaagcctggtccgaga 86
>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
(barrel medic)
Length = 181
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 20 aggaatgaagcctggtccgaga 41
||||||||||||||||||||||
Sbjct: 175 aggaatgaagcctggtccgaga 154
>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
Length = 166
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 20 aggaatgaagcctggtccgaga 41
||||||||||||||||||||||
Sbjct: 160 aggaatgaagcctggtccgaga 139
>RF00075;mir-166;BABK01008352.1/1692-1590 34305:Lotus japonicus
Length = 103
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 ggaatgaagcctggtccgagaa 42
||||||||||||||||||||||
Sbjct: 96 ggaatgaagcctggtccgagaa 75
>RF00075;mir-166;CAAP02007291.1/14711-14590 29760:Vitis vinifera
Length = 122
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 20 aggaatgaagcctggtccgaga 41
||||||||||||||||||||||
Sbjct: 116 aggaatgaagcctggtccgaga 95
>RF00075;mir-166;ABXC01005455.1/25016-25131 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 20 aggaatgaagcctggtccgaga 41
||||||||||||||||||||||
Sbjct: 110 aggaatgaagcctggtccgaga 89
>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
Indica Group
Length = 87
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 136 gccagacaacattcctctcaac 157
||||||||||||||||||||||
Sbjct: 22 gccagacaacattcctctcaac 1
>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
Japonica Group
Length = 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 20 aggaatgaagcctggtccgaga 41
||||||||||||||||||||||
Sbjct: 129 aggaatgaagcctggtccgaga 108
