miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AAJJ01000198.1/34838-34768 7070:Tribolium
          castaneum (red flour beetle)
          Length = 71

 Score =  117 bits (59), Expect = 3e-26
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                      
Query: 12 ctacatctaccctgtagatccgaatttgtttgaaaaacggcgacaaattcggttctagag 71
          |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||
Sbjct: 1  ctacatctaccctgtagatccgaatttgtttgaaatcaggcgacaaattcggttctagag 60

                     
Query: 72 aggtttgtgtg 82
          |||||||||||
Sbjct: 61 aggtttgtgtg 71




>RF00104;mir-10;ABJB011126277.1/3833-3903 6945:Ixodes scapularis
          (black-legged tick)
          Length = 71

 Score = 93.7 bits (47), Expect = 4e-19
 Identities = 65/71 (91%)
 Strand = Plus / Plus

                                                                      
Query: 12 ctacatctaccctgtagatccgaatttgtttgaaaaacggcgacaaattcggttctagag 71
          ||||||||||||||||||||||||||||| || || | | | ||||||||||||||||||
Sbjct: 1  ctacatctaccctgtagatccgaatttgtctgcaacaagactacaaattcggttctagag 60

                     
Query: 72 aggtttgtgtg 82
          |||||||||||
Sbjct: 61 aggtttgtgtg 71




>RF00104;mir-10;ABKQ02021837.1/5843-5769 377270:Anopheles gambiae
          S
          Length = 75

 Score = 60.0 bits (30), Expect = 5e-09
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 12 ctacatctaccctgtagatccgaatttgtttgaa 45
          ||||||| ||||||||||||||||||||||||||
Sbjct: 1  ctacatccaccctgtagatccgaatttgtttgaa 34



 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 54 acaaattcggttctagagaggtttgtgtg 82
          |||||||||||||||||||||||||||||
Sbjct: 47 acaaattcggttctagagaggtttgtgtg 75




>RF00104;mir-10;AAPT01019387.1/166139-166214 7222:Drosophila
          grimshawi
          Length = 76

 Score = 60.0 bits (30), Expect = 5e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 53 gacaaattcggttctagagaggtttgtgtg 82
          ||||||||||||||||||||||||||||||
Sbjct: 47 gacaaattcggttctagagaggtttgtgtg 76



 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 17 tctaccctgtagatccgaatttgtt 41
          |||||||||||||||||||||||||
Sbjct: 6  tctaccctgtagatccgaatttgtt 30




>RF00104;mir-10;AAQB01008633.1/164536-164458 7260:Drosophila
          willistoni
          Length = 79

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 12 ctacatctaccctgtagatccgaatttgttt 42
          |||| ||||||||||||||||||||||||||
Sbjct: 1  ctacgtctaccctgtagatccgaatttgttt 31



 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 53 gacaaattcggttctagagaggttt 77
          |||||||||||||||||||||||||
Sbjct: 48 gacaaattcggttctagagaggttt 72




>RF00104;mir-10;AAPU01011054.1/176581-176658 7230:Drosophila
          mojavensis
          Length = 78

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 53 gacaaattcggttctagagaggtttgtgtgg 83
          ||||||||||||||||||||||||| |||||
Sbjct: 47 gacaaattcggttctagagaggtttatgtgg 77



 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 17 tctaccctgtagatccgaatttgtt 41
          |||||||||||||||||||||||||
Sbjct: 6  tctaccctgtagatccgaatttgtt 30




>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
          Length = 76

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 19 taccctgtagatccgaatttgtttgaaaa 47
          |||||||||||||||||||||| ||||||
Sbjct: 8  taccctgtagatccgaatttgtgtgaaaa 36




>RF00104;mir-10;AC165428.1/216964-216881 7668:Strongylocentrotus
          purpuratus
          Length = 84

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 13 tacatctaccctgtagatccgaatttgt 40
          |||||| |||||||||||||||||||||
Sbjct: 2  tacatcaaccctgtagatccgaatttgt 29




>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
          (African savanna elephant)
          Length = 76

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 taccctgtagatccgaatttgt 40
          ||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgt 29




>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
          (chicken)
          Length = 75

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 taccctgtagatccgaatttgt 40
          ||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgt 29




>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
          tropicalis (western clawed frog)
          Length = 75

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 taccctgtagatccgaatttgt 40
          ||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgt 29




>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
          (ghost shark)
          Length = 76

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 taccctgtagatccgaatttgt 40
          ||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgt 29




>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 75

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 taccctgtagatccgaatttgt 40
          ||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgt 29