miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC155803.26/43739-43832 3880:Medicago truncatula
(barrel medic)
Length = 94
Score = 75.8 bits (38), Expect = 1e-13
Identities = 72/82 (87%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 28 tatagggcttctctttgttggcaggaaacga-catgaccacttcatgaaatatcttgcca 86
|||||||||||||||| ||||||||||| | |||||||| | ||| | | ||||||||
Sbjct: 9 tatagggcttctctttcttggcaggaaattatcatgaccattccatcatgtgtcttgcca 68
Query: 87 aaggagagttgccctgttgctg 108
||||||||||||||||||||||
Sbjct: 69 aaggagagttgccctgttgctg 90
>RF00445;mir-399;AP007308.2/25934-26026 34305:Lotus japonicus
Length = 93
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 79 tcttgccaaaggagagttgccctgttgctgcttt 112
||||||||||||||||||||||||||||||||||
Sbjct: 60 tcttgccaaaggagagttgccctgttgctgcttt 93
>RF00445;mir-399;BABK01105304.1/403-505 34305:Lotus japonicus
Length = 103
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 80 cttgccaaaggagagttgccctgttgctgcttt 112
|||||||||||||||||||||||| ||||||||
Sbjct: 71 cttgccaaaggagagttgccctgtggctgcttt 103
>RF00445;mir-399;DQ063659.1/70-185 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 80 cttgccaaaggagagttgccctgt 103
||||||||||||||||||||||||
Sbjct: 83 cttgccaaaggagagttgccctgt 106
>RF00445;mir-399;ABXC01004408.1/291013-291114 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 72 tgccaaaggagagttgccctgt 93
