miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;BABK01105304.1/403-505 34305:Lotus japonicus
Length = 103
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 87 taacttgccaaaggagagttgccctgtggctgcttt 122
||||||||||||||||||||||||||||||||||||
Sbjct: 68 taacttgccaaaggagagttgccctgtggctgcttt 103
>RF00445;mir-399;AP007308.2/25934-26026 34305:Lotus japonicus
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 90 cttgccaaaggagagttgccctgtggctgcttt 122
|||||||||||||||||||||||| ||||||||
Sbjct: 61 cttgccaaaggagagttgccctgttgctgcttt 93
>RF00445;mir-399;DQ063659.1/70-185 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 acttgccaaaggagagttgccctgt 113
|||||||||||||||||||||||||
Sbjct: 82 acttgccaaaggagagttgccctgt 106
>RF00445;mir-399;AASG02006945.1/8927-9041 3988:Ricinus communis
(castor bean)
Length = 115
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 90 cttgccaaaggagagttgccctgtggctgcttt 122
||||||||||||||| ||||||||| |||||||
Sbjct: 83 cttgccaaaggagagctgccctgtgactgcttt 115
>RF00445;mir-399;AC155803.26/43739-43832 3880:Medicago truncatula
(barrel medic)
Length = 94
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 90 cttgccaaaggagagttgccctgtggctg 118
|||||||||||||||||||||||| ||||
Sbjct: 62 cttgccaaaggagagttgccctgttgctg 90
>RF00445;mir-399;ABIM01002081.1/1084-952 3649:Carica papaya (papaya)
Length = 133
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 88 aacttgccaaaggagagttgccctgtg 114
||||||||||||||||| |||||||||
Sbjct: 99 aacttgccaaaggagagctgccctgtg 125
>RF00445;mir-399;CAAP02003948.1/3813-3690 29760:Vitis vinifera
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 gccaaaggagagttgccctgtg 114
||||||||||||||||||||||
Sbjct: 95 gccaaaggagagttgccctgtg 116
>RF00445;mir-399;ABXC01004408.1/291013-291114 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 tgccaaaggagagttgccctgt 113
||||||||||||||||||||||
Sbjct: 72 tgccaaaggagagttgccctgt 93
