miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;BABK01034163.1/917-1020 34305:Lotus japonicus
Length = 104
Score = 75.8 bits (38), Expect = 2e-13
Identities = 76/87 (87%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 38 caaggtattggcgcgcctcaatttgaagaca----tggttaacaggaaaaccaaccatgt 93
|||||||||| |||| ||||||||||||||| ||| ||||| ||||||||| |||||
Sbjct: 8 caaggtattgacgcgtctcaatttgaagacatggctggctaacatgaaaaccaatcatgt 67
Query: 94 agttttaattgagccgcgtcaatatct 120
|| ||| ||||||||||||||||||||
Sbjct: 68 ag-tttgattgagccgcgtcaatatct 93
>RF00643;MIR171_1;AC157488.1/72896-73001 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 38 caaggtattggcgcgcctcaatttgaagacatgg 71
||||||||||||||||||||||||||| ||||||
Sbjct: 8 caaggtattggcgcgcctcaatttgaatacatgg 41
>RF00643;MIR171_1;CAAP02000614.1/91102-91000 29760:Vitis vinifera
Length = 103
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 40 aggtattggcgcgcctcaatttgaagacatggtta 74
||||||||||| |||||||||| ||||||||||||
Sbjct: 10 aggtattggcgtgcctcaatttaaagacatggtta 44
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 101 attgagccgcgtcaatatctcatcttgcac 130
||||||||||||||||||||| | ||||||
Sbjct: 73 attgagccgcgtcaatatctccttttgcac 102
