miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
trichocarpa
Length = 103
Score = 107 bits (54), Expect = 3e-23
Identities = 88/99 (88%), Gaps = 4/99 (4%)
Strand = Plus / Plus
Query: 14 ggaaaaagtgaagctgccagcatgatctagctttggttagagagagcagaagagtgctaa 73
||||||||||||||||||||||||||||| ||||||||||||| || | || ||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatctatctttggttagagaaag----aaaggactaa 61
Query: 74 ccctgactaggtcatgctgtgacagcctcactccttcct 112
|||| |||||||||||||||||||||||||||||||||
Sbjct: 62 ccctagctaggtcatgctgtgacagcctcactccttcct 100
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 87.7 bits (44), Expect = 3e-17
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 14 ggaaaaagtgaagctgccagcatgatctagctttggttagagagagcagaagagtgctaa 73
||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatctagctttggttagagaaagaggtagagtgctaa 65
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 77.8 bits (39), Expect = 3e-14
Identities = 89/104 (85%), Gaps = 5/104 (4%)
Strand = Plus / Plus
Query: 14 ggaaaaagtgaagctgccagcatgatctagctttggttagag-agagcagaag----agt 68
|||||| |||||||||||||||||||||| |||||||||||| || ||||| ||
Sbjct: 6 ggaaaaggtgaagctgccagcatgatctatctttggttagagaaggatagaagcgaaaga 65
Query: 69 gctaaccctgactaggtcatgctgtgacagcctcactccttcct 112
|||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 66 actaaccctagctaggtcatgctctgacagcctcactccttcct 109
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 10 caaaggaaaaagtgaagctgccagcatgatctagctttggtta 52
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2 caaaggaaaaagtgaagctgccagcatgatctaggtttggtta 44
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 71 taaccctgactaggtcatgctgtgacagcctcactccttcct 112
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 290 taaccctgactaggtcatgctgtgctagcctcactccttcct 331
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 73.8 bits (37), Expect = 5e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 9 gcaaaggaaaaagtgaagctgccagcatgatctagct 45
|||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcaaaggaaaaagtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 73.8 bits (37), Expect = 5e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 14 ggaaaaagtgaagctgccagcatgatctagctttggttagagaga 58
|||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 6 ggaaaaggtgaagctgccagcatgatctagctttggttagtgaga 50
Score = 69.9 bits (35), Expect = 7e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 66 agtgctaaccctgactaggtcatgctgtgacagcctcactccttcct 112
|||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 94 agtgctaaccctagctaggtcatgctctgacagcctcactccttcct 140
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 14 ggaaaaagtgaagctgccagcatgatctagctttgg 49
|||| |||||||||||||||||||||||||||||||
Sbjct: 6 ggaataagtgaagctgccagcatgatctagctttgg 41
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 69 gctaaccctgactaggtcatgctgtgacagcctcactccttcct 112
||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 72 gctaaccctagctaggtcatgccctgacagcctcactccttcct 115
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 20 agtgaagctgccagcatgatctagctttggtt 51
||||||||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagctttggtt 43
>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 14 ggaaaaagtgaagctgccagcatgatctagctttggtta 52
|||| |||||||||||||||||||||||| |||||||||
Sbjct: 6 ggaacaagtgaagctgccagcatgatctatctttggtta 44
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 80 ctaggtcatgctgtgacagcctcactccttcctg 113
|||||||||||| |||||||||||||||||||||
Sbjct: 81 ctaggtcatgctctgacagcctcactccttcctg 114
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 agtgaagctgccagcatgatctagct 45
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 agtgaagctgccagcatgatctagct 45
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 agtgaagctgccagcatgatctagct 45
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa
Japonica Group
Length = 152
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 agtgaagctgccagcatgatctagct 45
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;EU084500.1/298-436 260130:Acca sellowiana
Length = 139
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 71 taaccctgactaggtcatgctgtgacagcctcactccttcc 111
||||||| ||||||||||||| |||||||||||| |||||
Sbjct: 95 taaccctagctaggtcatgctgcgacagcctcacttcttcc 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 agtgaagctgccagcatgatcta 42
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 ggaaaaagtgaagctgccagcatgatcta 42
|||| ||||||||||||||||||||||||
Sbjct: 6 ggaacaagtgaagctgccagcatgatcta 34
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 81 taggtcatgctgtgacagcctcactccttcct 112
||||||||||| |||||||||||||||||||
Sbjct: 72 taggtcatgctcggacagcctcactccttcct 103
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 gaaaaagtgaagctgccagcatgatcta 42
|||| |||||||||||||||||||||||
Sbjct: 7 gaaagagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC189327.2/282-159 51351:Brassica rapa subsp.
pekinensis
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatctag 43
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 gtgaagctgccagcatgatcta 42
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
