miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 147 bits (74), Expect = 3e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 7 atatgcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtg 66
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 1 atatgcctggctccctgtatgccatttgcagagcccaccggcacatcgatggccttcgtg 60
Query: 67 gatggcgtatgaggagccatgcatat 92
||||||||||||||||||||||||||
Sbjct: 61 gatggcgtatgaggagccatgcatat 86
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 141 bits (71), Expect = 2e-33
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggat 69
|||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaacggatcctcgatggcctccgtggat 63
Query: 70 ggcgtatgaggagccatgcatat 92
|||||||||||||||||||||||
Sbjct: 64 ggcgtatgaggagccatgcatat 86
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 139 bits (70), Expect = 7e-33
Identities = 80/82 (97%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggat 69
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgcagagcccaccg-agcatcgctggcctccgtggat 62
Query: 70 ggcgtatgaggagccatgcata 91
||||||||||||||||||||||
Sbjct: 63 ggcgtatgaggagccatgcata 84
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 113 bits (57), Expect = 4e-25
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 8 tatgcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtgg 67
|||||||||||||||||||||||| ||| ||||||| || || ||||||| |||||||||
Sbjct: 2 tatgcctggctccctgtatgccatatgctgagcccatcg-agtatcgatgacctccgtgg 60
Query: 68 atggcgtatgaggagccatgcatat 92
|||||||||||||||||||||||||
Sbjct: 61 atggcgtatgaggagccatgcatat 85
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 77.8 bits (39), Expect = 2e-14
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggat 69
||||||||||||||||||||||||| ||||| || || | |||| ||| ||| |||||
Sbjct: 4 tgcctggctccctgtatgccatttggagagctcatcgaaacatcaatgatctctttggat 63
Query: 70 ggcgtatgaggagccatgcatat 92
|||||||||||||||| ||||||
Sbjct: 64 ggcgtatgaggagccaagcatat 86
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 75.8 bits (38), Expect = 9e-14
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 9 atgcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtgga 68
|||||||||||||||||||||||||||| || ||||| ||| || | | |||| || |||
Sbjct: 3 atgcctggctccctgtatgccatttgcaaagtccacccgaggattggtagccttcgcgga 62
Query: 69 tggcgtatgaggagccatgcat 90
|||||| ||||||||||||||
Sbjct: 63 tggcgtgcgaggagccatgcat 84
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 7 atatgcctggctccctgtatgccatttgcagagcccaccg 46
|||||||||||||||||||||||||||||| ||| |||||
Sbjct: 1 atatgcctggctccctgtatgccatttgcaaagctcaccg 40
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccatttgcagag 39
||||||||||||||||||||||||| ||||
Sbjct: 4 tgcctggctccctgtatgccatttgtagag 33
>RF00247;mir-160;AY728427.1/2-87 3694:Populus trichocarpa
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccatttgcagagcccaccggagcatcgatggcctccgtggat 69
|||||||||||||| |||||||||||| ||| || | || | ||| |||||| ||||||
Sbjct: 4 tgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggccttggtggat 63
Query: 70 ggcgt 74
|||||
Sbjct: 64 ggcgt 68
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccatttg 34
|||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttg 28
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 64 gtggatggcgtatgaggagccatgcatat 92
|||||||||||||||||||||| ||||||
Sbjct: 58 gtggatggcgtatgaggagccaagcatat 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccat 31
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 atgcctggctccctgtatgccatttgca 36
||||||||||||||||||||||| ||||
Sbjct: 3 atgcctggctccctgtatgccatctgca 30
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 atatgcctggctccctgtatgcca 30
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 atatgcctggctccctgtatgcca 30
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 atatgcctggctccctgtatgcca 30
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 atatgcctggctccctgtatgcca 30
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tatgcctggctccctgtatgcca 30
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tatgcctggctccctgtatgcca 30
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tatgcctggctccctgtatgcca 30
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tatgcctggctccctgtatgcca 30
|||||||||||||||||||||||
Sbjct: 1 tatgcctggctccctgtatgcca 23
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tatgcctggctccctgtatgcca 30
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AY551220.1/23-122 4530:Oryza sativa (rice)
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 atatgcctggctccctgtatgcc 29
|||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcc 23
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 atgcctggctccctgtatgcca 30
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 atgcctggctccctgtatgcca 30
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccatttgc 35
||||||||||||||||||||| ||||
Sbjct: 4 tgcctggctccctgtatgccacttgc 29
