miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AY664417.1/307265-307178 4577:Zea mays
Length = 88
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 179 tcggaccaggcttcattcctcccaa 203
|||||||||||||||||||||||||
Sbjct: 63 tcggaccaggcttcattcctcccaa 87
>RF00075;mir-166;CT009488.4/103389-103285 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 179 tcggaccaggcttcattcctccca 202
||||||||||||||||||||||||
Sbjct: 80 tcggaccaggcttcattcctccca 103
>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 25 tttgagggggatgttggctggctcga 50
||||||||| ||||||||||||||||
Sbjct: 1 tttgaggggaatgttggctggctcga 26
>RF00075;mir-166;AM485267.2/15969-16057 29760:Vitis vinifera
Length = 89
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 25 tttgagggggatgttggctggctcga 50
||||||||| ||||||||||||||||
Sbjct: 1 tttgaggggaatgttggctggctcga 26
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 179 tcggaccaggcttcattcctcccaaa 204
||||||||||||||||||||| ||||
Sbjct: 64 tcggaccaggcttcattcctctcaaa 89
>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
(sorghum)
Length = 191
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 179 tcggaccaggcttcattcctcccaaa 204
||||||||||||||||||| ||||||
Sbjct: 166 tcggaccaggcttcattccccccaaa 191
>RF00075;mir-166;ABXC01002961.1/62497-62388 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 179 tcggaccaggcttcattcctcccaaa 204
||||||||||||||||||||| ||||
Sbjct: 85 tcggaccaggcttcattcctcgcaaa 110
>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 160
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 179 tcggaccaggcttcattcctcccaaa 204
||||||||||||||||||| ||||||
Sbjct: 135 tcggaccaggcttcattccccccaaa 160
>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
Indica Group
Length = 180
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 179 tcggaccaggcttcattcctcccaaa 204
||||||||||||||||||| ||||||
Sbjct: 155 tcggaccaggcttcattccccccaaa 180
>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
Group
Length = 179
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 179 tcggaccaggcttcattcctcccaaa 204
||||||||||||||||||| ||||||
Sbjct: 154 tcggaccaggcttcattccccccaaa 179
