miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01059;mir-598;AABR04000561.1/12890-12985 10116:Rattus
norvegicus (Norway rat)
Length = 96
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 34 tcgtcatcgtcttcatcgtcatcatcatc 62
||||||||||| |||||||||||||||||
Sbjct: 61 tcgtcatcgtcatcatcgtcatcatcatc 89
>RF01059;mir-598;ABQO010144779.1/3044-3137 9315:Macropus eugenii
(tammar wallaby)
Length = 94
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 40 tcgtcttcatcgtcatcatcatc 62
|||||||||||||||||||||||
Sbjct: 39 tcgtcttcatcgtcatcatcatc 17
>RF01059;mir-598;CR936412.13/57784-57688 7955:Danio rerio
(zebrafish)
Length = 97
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 30 ttcttcgtcatcgtcttcatcgtcatcatca 60
|||||| |||||||||||||| |||||||||
Sbjct: 67 ttcttcctcatcgtcttcatcttcatcatca 97
>RF01059;mir-598;AACY023168764.1/52-129 408172:marine metagenome
Length = 78
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 37 tcatcgtcttcatcgtcatcatcatc 62
|||||||| |||||||||||||||||
Sbjct: 48 tcatcgtcatcatcgtcatcatcatc 23
>RF01059;mir-598;AAGJ02027507.1/4860-4765 7668:Strongylocentrotus
purpuratus
Length = 96
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 tcatcgtcttcatcgtcatcatcatc 62
|||||||| |||||||||||||||||
Sbjct: 31 tcatcgtcatcatcgtcatcatcatc 56
>RF01059;mir-598;AAGJ02117928.1/3-95 7668:Strongylocentrotus
purpuratus
Length = 93
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 37 tcatcgtcttcatcgtcatcatcatc 62
|||||||| |||||||||||||||||
Sbjct: 51 tcatcgtcatcatcgtcatcatcatc 26
>RF01059;mir-598;AAEX02009934.1/18003-18071 9615:Canis lupus
familiaris (dog)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 37 tcatcgtcttcatcgtcatcatcatc 62
|||||||| |||||||||||||||||
Sbjct: 30 tcatcgtcatcatcgtcatcatcatc 5
>RF01059;mir-598;AAHY01124327.1/2124-2030 10090:Mus musculus
(house mouse)
Length = 95
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 tcatcgtcttcatcgtcatcatcatc 62
|||||||| |||||||||||||||||
Sbjct: 69 tcatcgtcatcatcgtcatcatcatc 94
>RF01059;mir-598;CAAK05057188.1/1475-1379 7955:Danio rerio
(zebrafish)
Length = 97
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 37 tcatcgtcttcatcgtcatcatcatc 62
|||||||| |||||||||||||||||
Sbjct: 33 tcatcgtcatcatcgtcatcatcatc 8
>RF01059;mir-598;ABLF01030321.1/9587-9472 7029:Acyrthosiphon pisum
(pea aphid)
Length = 116
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 37 tcatcgtcttcatcgtcatcatcatc 62
|||||||||||||| |||||||||||
Sbjct: 33 tcatcgtcttcatcatcatcatcatc 8
>RF01059;mir-598;AAFI02000003.1/818751-818868 352472:Dictyostelium
discoideum AX4
Length = 118
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 31 tcttcgtcatcgtcttcatcgtcatcatca 60
|||||||||||||||||||| || ||||||
Sbjct: 45 tcttcgtcatcgtcttcatcatcttcatca 16
>RF01059;mir-598;AASC02024878.1/11526-11431 6500:Aplysia
californica (California sea hare)
Length = 96
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 34 tcgtcatcgtcttcatcgtcatcatcatc 62
|||||||| || |||||||||||||||||
Sbjct: 54 tcgtcatcttcatcatcgtcatcatcatc 26
>RF01059;mir-598;AASC02010496.1/2194-2290 6500:Aplysia californica
(California sea hare)
Length = 97
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 34 tcgtcatcgtcttcatcgtcatcatcatc 62
||||||||||| ||||| |||||||||||
Sbjct: 39 tcgtcatcgtcatcatcatcatcatcatc 11
>RF01059;mir-598;AAGJ02085171.1/832-929 7668:Strongylocentrotus
purpuratus
Length = 98
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 35 cgtcatcgtcttcatcgtcatcatc 59
||||||| |||||||||||||||||
Sbjct: 52 cgtcatcatcttcatcgtcatcatc 76
>RF01059;mir-598;AABR04022525.1/3795-3700 10116:Rattus norvegicus
(Norway rat)
Length = 96
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 34 tcgtcatcgtcttcatcgtcatcatcatc 62
||||||||||| ||||| |||||||||||
Sbjct: 49 tcgtcatcgtcgtcatcatcatcatcatc 77
>RF01059;mir-598;AAHX01053836.1/31844-31935 10116:Rattus
norvegicus (Norway rat)
Length = 92
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 34 tcgtcatcgtcttcatcgtcatcatcatc 62
|||||||||| |||||||||||||||||
Sbjct: 50 tcgtcatcgttgtcatcgtcatcatcatc 22
>RF01059;mir-598;AAHY01469015.1/759-665 10090:Mus musculus (house
mouse)
Length = 95
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 34 tcgtcatcgtcttcatcgtcatcatcatc 62
|||||||| || |||||||||||||||||
Sbjct: 51 tcgtcatcatcgtcatcgtcatcatcatc 79
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 34 tcgtcatcgtcttcatcgtcatcatcatc 62
||||||||||| ||||| |||||||||||
Sbjct: 60 tcgtcatcgtcatcatcatcatcatcatc 88
>RF01059;mir-598;AAWZ01016740.1/65861-65944 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 34 tcgtcatcgtcttcatcgtcatcatcatc 62
||||||||||| ||||| |||||||||||
Sbjct: 33 tcgtcatcgtcatcatcatcatcatcatc 5
>RF01059;mir-598;AAWZ01020522.1/50625-50544 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 42.1 bits (21), Expect = 7e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 29 attcttcgtcatcgtcttcatcgtcatcatcat 61
||||||| ||||| || ||||||||||||||||
Sbjct: 42 attcttcatcatcatcatcatcgtcatcatcat 74
>RF01059;mir-598;AAWZ01011645.1/80816-80757 28377:Anolis
carolinensis (green anole)
Length = 60
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 37 tcatcgtcttcatcgtcatcatcat 61
|||||||| ||||||||||||||||
Sbjct: 27 tcatcgtcatcatcgtcatcatcat 3
>RF01059;mir-598;AAZO01006288.1/10382-10458 121224:Pediculus
humanus corporis (human body louse)
Length = 77
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 34 tcgtcatcgtcttcatcgtcatcatcatc 62
||||||||||| ||||| |||||||||||
Sbjct: 48 tcgtcatcgtcgtcatcatcatcatcatc 20
>RF01059;mir-598;AAWU01015799.1/1532-1644 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 113
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 34 tcgtcatcgtcttcatcgtcatcatcatc 62
||||||||||| ||||| |||||||||||
Sbjct: 33 tcgtcatcgtcgtcatcatcatcatcatc 5
>RF01059;mir-598;AAPT01021434.1/2826-2931 7222:Drosophila
grimshawi
Length = 106
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 34 tcgtcatcgtcttcatcgtcatcatcatc 62
||||||||||| ||||| |||||||||||
Sbjct: 42 tcgtcatcgtcatcatcatcatcatcatc 14
>RF01059;mir-598;AANI01016597.1/18315-18448 7244:Drosophila
virilis
Length = 134
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 34 tcgtcatcgtcttcatcgtcatcatcatc 62
||||||||||| ||||| |||||||||||
Sbjct: 45 tcgtcatcgtcatcatcatcatcatcatc 17
>RF01059;mir-598;AC115598.2/34724-34823 44689:Dictyostelium
discoideum
Length = 100
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 34 tcgtcatcgtcttcatcgtcatcatcatc 62
||||| ||||| |||||||||||||||||
Sbjct: 62 tcgtcgtcgtcgtcatcgtcatcatcatc 90
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 34 tcgtcatcgtcttcatcgtcatcatcatc 62
||||||||||| ||||| |||||||||||
Sbjct: 71 tcgtcatcgtcatcatcatcatcatcatc 99
>RF01059;mir-598;AM910996.2/1854627-1854531 5851:Plasmodium
knowlesi strain H
Length = 97
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 34 tcgtcatcgtcttcatcgtcatcatcatc 62
|||||||| || |||||||||||||||||
Sbjct: 59 tcgtcatcatcatcatcgtcatcatcatc 87
