miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01942;mir-1937;CAAA01214895.1/357-468 10090:Mus musculus (house
mouse)
Length = 112
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 24 agttcaaggccagcctggtctacaga 49
||||||||||||||||||||||||||
Sbjct: 29 agttcaaggccagcctggtctacaga 4
>RF00100;7SK;AABR04018170.1/31400-31722 10116:Rattus norvegicus
(Norway rat)
Length = 323
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 15 atctctgtgagttcaaggccagcctggtct 44
||||||||||||||||||||| ||||||||
Sbjct: 277 atctctgtgagttcaaggccaacctggtct 306
>RF01942;mir-1937;AAHY01028167.1/11464-11345 10090:Mus musculus
(house mouse)
Length = 120
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 53 agttccaggatggccagggctacatagagaaaccctgtctc 93
|||||||||| |||||||||| | ||||||||||||||||
Sbjct: 48 agttccaggacagccagggctataaagagaaaccctgtctc 8
>RF01942;mir-1937;AAHY01043322.1/11565-11447 10090:Mus musculus
(house mouse)
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 35 agcctggtctacagagtgagttccagga 62
||||||||||||||||| ||||||||||
Sbjct: 9 agcctggtctacagagtaagttccagga 36
>RF00156;SNORA70;AC123699.10/78831-78680 10090:Mus musculus (house
mouse)
Length = 152
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 ggctacatagagaaaccctgtctc 93
||||||||||||||||||||||||
Sbjct: 2 ggctacatagagaaaccctgtctc 25
>RF00100;7SK;CAAA01104750.1/952-684 10090:Mus musculus (house mouse)
Length = 269
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 66 ccagggctacatagagaaaccctgtctc 93
||||||||||| ||||||||||||||||
Sbjct: 269 ccagggctacacagagaaaccctgtctc 242
