miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;ABPJ01071875.1/477-549 35575:Mchenga conophoros
Length = 73
Score = 129 bits (65), Expect = 7e-30
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 16 agtctagcagaatcctttctgcacaaactaggacgctttgacactcagtgtgcggaaatg 75
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtctaacagaatcgtttctgcacaaactaggacgctttgacactcagtgtgcggaaatg 60
Query: 76 cttctgctcaact 88
|||||||||||||
Sbjct: 61 cttctgctcaact 73
>RF00693;mir-147;CAAE01014581.1/5651544-5651616 99883:Tetraodon
nigroviridis
Length = 73
Score = 97.6 bits (49), Expect = 3e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 16 agtctagcagaatcctttctgcacaaactaggacgctttgacactcagtgtgcggaaatg 75
|||||| |||||||||||||||||||||||| | | |||||||||||||||||||||| |
Sbjct: 1 agtctaacagaatcctttctgcacaaactagaatgatttgacactcagtgtgcggaaacg 60
Query: 76 cttctgctc 84
|||||||||
Sbjct: 61 cttctgctc 69
>RF00693;mir-147;BAAF04016950.1/22862-22934 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 89.7 bits (45), Expect = 6e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 16 agtctagcagaatcctttctgcacaaactaggacgctttgacactcagtgtgcggaaatg 75
|||||| |||||||||||||||||||||||||| | ||| || ||||||||||||||||
Sbjct: 1 agtctaacagaatcctttctgcacaaactaggatgtttttacggtcagtgtgcggaaatg 60
Query: 76 cttctgctcaact 88
|||||||| ||||
Sbjct: 61 cttctgcttaact 73
>RF00693;mir-147;CAAB01000277.1/126166-126238 31033:Takifugu
rubripes
Length = 73
Score = 81.8 bits (41), Expect = 2e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 16 agtctagcagaatcctttctgcacaaactaggacgctttgacactcagtgtgcggaaatg 75
|||||| ||||||||||||||||| |||||| | | ||| |||||||||||||||||| |
Sbjct: 1 agtctaacagaatcctttctgcaccaactagaatgatttaacactcagtgtgcggaaacg 60
Query: 76 cttctgctc 84
|||||||||
Sbjct: 61 cttctgctc 69
>RF00693;mir-147;AANH01000229.1/71291-71222 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 70
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 53 ttgacactcagtgtgcggaaatgcttctgctc 84
||||||||| ||||||||||||||||||||||
Sbjct: 35 ttgacactcggtgtgcggaaatgcttctgctc 66
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 tcagtgtgcggaaatgcttctgct 83
||||||||||||||||||||||||
Sbjct: 42 tcagtgtgcggaaatgcttctgct 65
