miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00144;mir-199;AANH01004317.1/876-975 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 143 bits (72), Expect = 4e-34
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 ccccccgcctgcccagtgttcagactacctgttcatcaggctacagctgaacagtagtct 60
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 10 ccccctgcctgcccagtgttcagactacctgttcatccggctacagctgaacagtagtct 69
Query: 61 gcacattggttaggctgggc 80
||||||||||||||||||||
Sbjct: 70 gcacattggttaggctgggc 89
>RF00144;mir-199;ABPJ01052317.1/532-631 35575:Mchenga conophoros
Length = 100
Score = 133 bits (67), Expect = 4e-31
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 6 cgcctgcccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcaca 65
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 15 cgcctgcccagtgttcagactacctgttcatcaggctgcagctgaacagtagtctgcaca 74
Query: 66 ttggttaggct 76
|||||||||||
Sbjct: 75 ttggttaggct 85
>RF00144;mir-199;BX088529.6/78678-78580 7955:Danio rerio
(zebrafish)
Length = 99
Score = 127 bits (64), Expect = 2e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 1 ccccccgcctgcccagtgttcagactacctgttcatcaggctacagctgaacagtagtct 60
|||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 9 cccctcgcctgcccagtgttcagactacctgttcatcatgctgcagctgaacagtagtcc 68
Query: 61 gcacattggttaggctgggc 80
||||||||||||||||||||
Sbjct: 69 gcacattggttaggctgggc 88
>RF00144;mir-199;CAAB01000177.1/183726-183824 31033:Takifugu
rubripes
Length = 99
Score = 121 bits (61), Expect = 1e-27
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 7 gcctgcccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacat 66
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgcacat 75
Query: 67 tggttaggctggg 79
|||||| ||||||
Sbjct: 76 tggttaagctggg 88
>RF00144;mir-199;BAAE01184372.1/319-221 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 115 bits (58), Expect = 9e-26
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 3 ccccgcctgcccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgc 62
|||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct: 12 ccccgcctgcccagtgttcagactacctgttcctccagctacaactgaacagtagtctgc 71
Query: 63 acattggttaggct 76
||||||||||||||
Sbjct: 72 acattggttaggct 85
>RF00144;mir-199;AAWZ01010560.1/117412-117513 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 81.8 bits (41), Expect = 1e-15
Identities = 71/80 (88%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 3 ccccgcctgcccagtgttcagactacctgttcatcaggctac--agctgaacagtagtct 60
|||||||| |||||||||||||||||||||||| | ||||| || || ||||||||||
Sbjct: 12 ccccgccttcccagtgttcagactacctgttcaggaagctacaaaggtgtacagtagtct 71
Query: 61 gcacattggttaggctgggc 80
||||||||||||| ||||||
Sbjct: 72 gcacattggttagactgggc 91
>RF00144;mir-199;AAWR02017790.1/21207-21308 9796:Equus caballus
(horse)
Length = 102
Score = 73.8 bits (37), Expect = 3e-13
Identities = 70/80 (87%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 3 ccccgcctgcccagtgttcagactacctgttcatcaggctac--agctgaacagtagtct 60
||||||| ||||||||||||||||||||||||| |||| | | || ||||||||||
Sbjct: 12 ccccgcccgcccagtgttcagactacctgttcagggggctccgaatgtgtacagtagtct 71
Query: 61 gcacattggttaggctgggc 80
||||||||||||||||||||
Sbjct: 72 gcacattggttaggctgggc 91
>RF00144;mir-199;AANH01005434.1/24491-24590 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 73.8 bits (37), Expect = 3e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacattggtt 71
||||||||||||||||||||||||| | ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattatcatactggtgtacagtagtctgcacattggtt 80
Query: 72 aggctgggc 80
|| ||||||
Sbjct: 81 agactgggc 89
>RF00144;mir-199;AAHY01076446.1/77391-77291 10090:Mus musculus
(house mouse)
Length = 101
Score = 71.9 bits (36), Expect = 1e-12
Identities = 71/81 (87%), Gaps = 5/81 (6%)
Strand = Plus / Plus
Query: 3 ccccgcctgcccagtgttcagactacctgttcatcaggct---acagctgaacagtagtc 59
||||||| |||||||||||||||||||||||| ||||| ||| || |||||||||
Sbjct: 12 ccccgccatcccagtgttcagactacctgttcaggaggctgggaca--tgtacagtagtc 69
Query: 60 tgcacattggttaggctgggc 80
|||||||||||||||||||||
Sbjct: 70 tgcacattggttaggctgggc 90
>RF00144;mir-199;AANU01122656.1/5080-5181 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 69.9 bits (35), Expect = 5e-12
Identities = 64/71 (90%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttcatcaggcta-cagc-tgaacagtagtctgcacattgg 69
|||||||||||||||||||||||| ||||| || | || |||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaggctctcaacgtgtacagtagtctgcacattgg 80
Query: 70 ttaggctgggc 80
|||||||||||
Sbjct: 81 ttaggctgggc 91
>RF00144;mir-199;ABPJ01035359.1/311-410 35575:Mchenga conophoros
Length = 100
Score = 69.9 bits (35), Expect = 5e-12
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 4 cccgcctgcccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgca 63
|||||||||||||||||||||||||||||||| | | | || |||||||||||||
Sbjct: 13 cccgcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgca 72
Query: 64 cattggttaggctgg 78
|||||||||||||||
Sbjct: 73 cattggttaggctgg 87
>RF00144;mir-199;AANH01004681.1/136443-136347 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 69.9 bits (35), Expect = 5e-12
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 4 cccgcctgcccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgca 63
|||||||||||||||||||||||||||||||| | | | || |||||||||||||
Sbjct: 12 cccgcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgca 71
Query: 64 cattggttaggctgg 78
|||||||||||||||
Sbjct: 72 cattggttaggctgg 86
>RF00144;mir-199;BAAE01013242.1/84-183 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 69.9 bits (35), Expect = 5e-12
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 4 cccgcctgcccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgca 63
|||||||||||||||||||||||||||||||| | | | || |||||||||||||
Sbjct: 13 cccgcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgca 72
Query: 64 cattggttaggctgg 78
|||||||||||||||
Sbjct: 73 cattggttaggctgg 87
>RF00144;mir-199;ABDC01156515.1/926-825 30608:Microcebus murinus
(gray mouse lemur)
Length = 102
Score = 65.9 bits (33), Expect = 7e-11
Identities = 69/80 (86%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 3 ccccgcctgcccagtgttcagactacctgttcatcag--gctacagctgaacagtagtct 60
||||||| ||||||||||||||||||||||||| | ||| || | ||||||||||
Sbjct: 12 ccccgccggcccagtgttcagactacctgttcaggggctgctgcacgcgtacagtagtct 71
Query: 61 gcacattggttaggctgggc 80
||||||||||||||||||||
Sbjct: 72 gcacattggttaggctgggc 91
>RF00144;mir-199;AAKN02056464.1/56518-56417 10141:Cavia porcellus
(domestic guinea pig)
Length = 102
Score = 65.9 bits (33), Expect = 7e-11
Identities = 69/80 (86%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 3 ccccgcctgcccagtgttcagactacctgttcatcaggcta--cagctgaacagtagtct 60
||||||| ||||||||||||||||||||||||| | || || || ||||||||||
Sbjct: 12 ccccgccggcccagtgttcagactacctgttcaggcgcctctgcatgtgtacagtagtct 71
Query: 61 gcacattggttaggctgggc 80
||||||||||||||||||||
Sbjct: 72 gcacattggttaggctgggc 91
>RF00144;mir-199;CAAB01000803.1/18144-18243 31033:Takifugu
rubripes
Length = 100
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacattggtt 71
||||||||||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattgtcatactggtgtacagtagtctgcacattggtt 80
Query: 72 aggctgggc 80
|| ||||||
Sbjct: 81 agactgggc 89
>RF00144;mir-199;BAAF04061048.1/5562-5661 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacattggtt 71
||||||||||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattgtcatactggtgtacagtagtctgcacattggtt 80
Query: 72 aggctgggc 80
|| ||||||
Sbjct: 81 agactgggc 89
>RF00144;mir-199;CU138550.14/80968-81064 7955:Danio rerio
(zebrafish)
Length = 97
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 4 cccgcctgcccagtgttcagactacctgttca 35
||||||||||||||||||||||||||||||||
Sbjct: 12 cccgcctgcccagtgttcagactacctgttca 43
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgg 78
||||||||||||||||||||||||||||
Sbjct: 59 acagtagtctgcacattggttaggctgg 86
>RF00144;mir-199;AAFR03049221.1/24866-24967 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgggc 80
||||||||||||||||||||||||||||||
Sbjct: 62 acagtagtctgcacattggttaggctgggc 91
>RF00144;mir-199;AAQQ01144563.1/4013-4113 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 101
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgggc 80
||||||||||||||||||||||||||||||
Sbjct: 61 acagtagtctgcacattggttaggctgggc 90
>RF00144;mir-199;AAHX01020762.1/285-187 10116:Rattus norvegicus
(Norway rat)
Length = 99
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgggc 80
||||||||||||||||||||||||||||||
Sbjct: 59 acagtagtctgcacattggttaggctgggc 88
>RF00144;mir-199;ABRQ01043924.1/1531-1628 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgggc 80
||||||||||||||||||||||||||||||
Sbjct: 59 acagtagtctgcacattggttaggctgggc 88
>RF00144;mir-199;CT563248.9/85109-85010 7955:Danio rerio
(zebrafish)
Length = 100
Score = 60.0 bits (30), Expect = 4e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacattggtt 71
|||||||||||||||||||||||| | ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggatcatactggtgtacagtagtctgcacattggtt 80
Query: 72 ag 73
||
Sbjct: 81 ag 82
>RF00144;mir-199;CAAB01001079.1/26340-26439 31033:Takifugu
rubripes
Length = 100
Score = 60.0 bits (30), Expect = 4e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacattggtt 71
|||||||||||||||||||||||| | ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggattttactggtgtacagtagtctgcacattggtt 80
Query: 72 ag 73
||
Sbjct: 81 ag 82
>RF00144;mir-199;ABQF01040854.1/79152-79251 59729:Taeniopygia
guttata
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacattggtt 71
|||||||||||||||||||||||| | | | | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctgcacattggtt 80
Query: 72 aggctgggc 80
|| ||||||
Sbjct: 81 agactgggc 89
>RF00144;mir-199;AADN02026635.1/12137-12039 9031:Gallus gallus
(chicken)
Length = 99
Score = 56.0 bits (28), Expect = 7e-08
Identities = 63/71 (88%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 9 ctgcccagtgttcagactacctgttcatcaggctac-ag-ctgaacagtagtctgcacat 66
||||||||||||||||||||||||||| | |||| || || ||||||||||||||||
Sbjct: 17 ctgcccagtgttcagactacctgttca--ggactacgagattgtacagtagtctgcacat 74
Query: 67 tggttaggctg 77
|||||||||||
Sbjct: 75 tggttaggctg 85
>RF00144;mir-199;CAAK05055714.1/3303-3204 7955:Danio rerio
(zebrafish)
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctg 77
|||||||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttaggctg 86
>RF00144;mir-199;AAVX01256932.1/291-390 7868:Callorhinchus milii
(ghost shark)
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 11 gcccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacattggt 70
||||||||||||||||||||||||| | || | || ||||||||||||||||||||
Sbjct: 20 gcccagtgttcagactacctgttcaggacaatattgttgtacagtagtctgcacattggt 79
Query: 71 tag 73
|||
Sbjct: 80 tag 82
>RF00144;mir-199;AAHX01053598.1/14659-14563 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctgggc 80
||||||||| ||||||||||||||||||||
Sbjct: 57 acagtagtcagcacattggttaggctgggc 86
>RF00144;mir-199;BAAF04076833.1/4729-4828 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 12 cccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacattggtt 71
|||||||||||||||||||||||| | | | | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagaatcttcctggtgtacagtagtctgcacattggtt 80
Query: 72 ag 73
||
Sbjct: 81 ag 82
>RF00144;mir-199;ABRO01249229.1/2824-2923 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggctggg 79
||||||||||||||| |||||||||||||
Sbjct: 61 acagtagtctgcacactggttaggctggg 89
>RF00144;mir-199;ABRQ01040059.1/381-480 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 3 ccccgcctgcccagtgttcagactacctgttca 35
||||||| ||||||||||||||||||||||||
Sbjct: 12 ccccgccaacccagtgttcagactacctgttca 44
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttaggc 75
|||||||||||||||||||||||||
Sbjct: 61 acagtagtctgcacattggttaggc 85
>RF00144;mir-199;ABRT010369364.1/546-644 9478:Tarsius syrichta
(Philippine tarsier)
Length = 99
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 gcccagtgttcagactacctgtt 33
|||||||||||||||||||||||
Sbjct: 19 gcccagtgttcagactacctgtt 41
