miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00705;mir-202;BAAF04099470.1/3897-3811 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 133 bits (67), Expect = 4e-31
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 7 ctcgctgttcctttttcctatgcatatacctttttcagatgtaactttaaagaggcatag 66
||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||
Sbjct: 1 ctcgctgttcctttttcctatgcatatacttctttgacatgtaactttaaagaggcataa 60
Query: 67 ggcatgggaaaatggggctgcagaggt 93
|||||||||||||||||||||||||||
Sbjct: 61 ggcatgggaaaatggggctgcagaggt 87
>RF00705;mir-202;AC149072.1/21212-21298 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 87
Score = 77.8 bits (39), Expect = 2e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 7 ctcgctgttcctttttcctatgcatatacctttttcagatgtaactttaaagaggcatag 66
||||||||||||||||||||||||||||||| ||| | | | | | ||||| |||||||
Sbjct: 1 ctcgctgttcctttttcctatgcatatacctctttgaaaaatgaatgtaaaggggcatag 60
Query: 67 ggcatgggaaaatgg 81
|||||||||||||||
Sbjct: 61 ggcatgggaaaatgg 75
>RF00705;mir-202;ABQO010018421.1/2483-2569 9315:Macropus eugenii
(tammar wallaby)
Length = 87
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 13 gttcctttttcctatgcatatacctttttcagatgtaactttaaagaggcatagggcatg 72
||||||||||||||||||||||| | ||| ||| || | ||||||||| |||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgagaataaaatctaaagaggcgtagggcatg 66
Query: 73 ggaaaatggggc 84
||||||||||||
Sbjct: 67 ggaaaatggggc 78
>RF00705;mir-202;AADN02046542.1/8507-8421 9031:Gallus gallus
(chicken)
Length = 87
Score = 67.9 bits (34), Expect = 2e-11
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 7 ctcgctgttcctttttcctatgcatatacctttttcagatgtaactttaaagaggcatag 66
|||| |||||||||||||||||||||||| | ||| ||| | | |||||||||||||
Sbjct: 1 ctcgttgttcctttttcctatgcatatacttctttgagagtttgatctaaagaggcatag 60
Query: 67 ggcatgggaaaatggggc 84
|||||||||||||||||
Sbjct: 61 agcatgggaaaatggggc 78
>RF00705;mir-202;AAKN02002831.1/62715-62801 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 7 ctcgctgttcctttttcctatgcatatac 35
|||||||||||||||||||||||||||||
Sbjct: 1 ctcgctgttcctttttcctatgcatatac 29
>RF00705;mir-202;ABRQ01469264.1/9221-9135 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 54 taaagaggcatagggcatgggaaaatgg 81
|||||||| |||||||||||||||||||
Sbjct: 48 taaagaggtatagggcatgggaaaatgg 75
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 gttcctttttcctatgcatatac 35
|||||||||||||||||||||||
Sbjct: 7 gttcctttttcctatgcatatac 29
>RF00705;mir-202;CABD01575422.1/939-1025 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 gttcctttttcctatgcatatac 35
|||||||||||||||||||||||
Sbjct: 7 gttcctttttcctatgcatatac 29
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 54 taaagaggcatagggcatgggaaaatggggc 84
|||||||| |||||||||||||||| |||||
Sbjct: 48 taaagaggtatagggcatgggaaaacggggc 78
