miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00684;mir-122;BAAE01201314.1/775-848 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 123 bits (62), Expect = 3e-28
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 4 cagagctgtggagtgtgacaatggtgtttgtgtcctccgtatcaaacgccattatcacac 63
||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtttcctgcctatcaaacgccattatcacac 60
Query: 64 taaatagctacagt 77
||||||||||||||
Sbjct: 61 taaatagctacagt 74
>RF00684;mir-122;AAWZ01008604.1/2344-2417 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 89.7 bits (45), Expect = 5e-18
Identities = 66/71 (92%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 6 gagctgtggagtgtgacaatggtgtttgtgtcc--tccgtatcaaacgccattatcacac 63
||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct: 3 gagctgtggagtgtgacaatggtgtttgtatccaatccgt--caaacgccattatcacac 60
Query: 64 taaatagctac 74
|||||||||||
Sbjct: 61 taaatagctac 71
>RF00684;mir-122;CR925730.6/26724-26798 7955:Danio rerio
(zebrafish)
Length = 75
Score = 89.7 bits (45), Expect = 5e-18
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 4 cagagctgtggagtgtgacaatggtgtttgtgtcctccgt-atcaaacgccattatcaca 62
||||||||||||||||||||||||||||||| || || || ||||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtatcatctgtcgtcaaacgccattatcaca 60
Query: 63 ctaaatagc 71
|||||||||
Sbjct: 61 ctaaatagc 69
>RF00684;mir-122;AABR04103114.1/951-878 10116:Rattus norvegicus
(Norway rat)
Length = 74
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 4 cagagctgtggagtgtgacaatggtgtttgtgtcctccgtatcaaacgccattatcacac 63
||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 60
Query: 64 taaatagctac 74
|||| ||||||
Sbjct: 61 taaacagctac 71
>RF00684;mir-122;AAVX01098255.1/690-764 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 12 tggagtgtgacaatggtgtttgtgtcctccgt-atcaaacgccattatcacactaaata 69
||||||||||||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct: 9 tggagtgtgacaatggtgtttgtaatcactgacatcaaacgccattatcacactaaata 67
