miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00674;mir-187;BAAF04062858.1/307-199 8090:Oryzias latipes
(Japanese medaka)
Length = 109
Score = 155 bits (78), Expect = 1e-37
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 13 tgggccaggggctgcaacacaggacatgggtcctgcttctcctccccgctcgtgtcttgt 72
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 tgggccagcggctgcaacacaggacatgggtcctgcttctcctccccgctcgtgtcttgt 81
Query: 73 gttgcagccagtggagctgcct 94
||||||||||||||||||||||
Sbjct: 82 gttgcagccagtggagctgcct 103
>RF00674;mir-187;CAAB01000566.1/61799-61691 31033:Takifugu rubripes
Length = 109
Score = 137 bits (69), Expect = 3e-32
Identities = 87/93 (93%)
Strand = Plus / Plus
Query: 8 ttggctgggccaggggctgcaacacaggacatgggtcctgcttctcctccccgctcgtgt 67
||||| ||||||||||||||||||||||||||||||| ||| ||| | | ||||||||||
Sbjct: 17 ttggccgggccaggggctgcaacacaggacatgggtcatgcctctgcccaccgctcgtgt 76
Query: 68 cttgtgttgcagccagtggagctgcctgtcttc 100
|||||||||||||||||||||||||||||||||
Sbjct: 77 cttgtgttgcagccagtggagctgcctgtcttc 109
>RF00674;mir-187;BX927241.19/109900-110007 7955:Danio rerio
(zebrafish)
Length = 108
Score = 101 bits (51), Expect = 2e-21
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 9 tggctgggccaggggctgcaacacaggacatgggtcctgcttctcctccccgctcgtgtc 68
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct: 17 tggctgggccaggggctgcaacacaggacatgggagctgtctctcactcccgctcgtgtc 76
Query: 69 ttgtgttgcagccagtgga 87
|||||||||||||||||||
Sbjct: 77 ttgtgttgcagccagtgga 95
>RF00674;mir-187;AAPN01052341.1/8485-8382 9258:Ornithorhynchus
anatinus (platypus)
Length = 104
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagccagtggagc 89
||||||||||||||||||||||| |||||
Sbjct: 65 ctcgtgtcttgtgttgcagccagaggagc 93
>RF00674;mir-187;AAWZ01027996.1/55264-55367 28377:Anolis
carolinensis (green anole)
Length = 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagccag 83
|||||||||||||||||||||||
Sbjct: 65 ctcgtgtcttgtgttgcagccag 87
>RF00674;mir-187;AADN02008126.1/227633-227736 9031:Gallus gallus
(chicken)
Length = 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ctcgtgtcttgtgttgcagccag 83
|||||||||||||||||||||||
Sbjct: 65 ctcgtgtcttgtgttgcagccag 87
