miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00144;mir-199;AANH01004317.1/876-975 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 151 bits (76), Expect = 2e-36
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 14 gcctgcccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacat 73
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcatccggctacagctgaacagtagtctgcacat 75
Query: 74 tggttaggctgggctgggac 93
||||||||||||||||||||
Sbjct: 76 tggttaggctgggctgggac 95
>RF00144;mir-199;ABPJ01052317.1/532-631 35575:Mchenga conophoros
Length = 100
Score = 141 bits (71), Expect = 2e-33
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 14 gcctgcccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacat 73
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcatcaggctgcagctgaacagtagtctgcacat 75
Query: 74 tggttaggctgggctggga 92
|||||||||| ||||||||
Sbjct: 76 tggttaggctaggctggga 94
>RF00144;mir-199;BX088529.6/78678-78580 7955:Danio rerio
(zebrafish)
Length = 99
Score = 135 bits (68), Expect = 1e-31
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 14 gcctgcccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacat 73
|||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 15 gcctgcccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacat 74
Query: 74 tggttaggctgggctgggac 93
||||||||||||||||||||
Sbjct: 75 tggttaggctgggctgggac 94
>RF00144;mir-199;CAAB01000177.1/183726-183824 31033:Takifugu
rubripes
Length = 99
Score = 127 bits (64), Expect = 3e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 14 gcctgcccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacat 73
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgcacat 75
Query: 74 tggttaggctgggctgggac 93
|||||| |||||| ||||||
Sbjct: 76 tggttaagctgggttgggac 95
>RF00144;mir-199;BAAE01184372.1/319-221 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 109 bits (55), Expect = 7e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 14 gcctgcccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacat 73
|||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcctccagctacaactgaacagtagtctgcacat 75
Query: 74 tggttaggctgggctggga 92
|||||||||| | ||||||
Sbjct: 76 tggttaggctagactggga 94
>RF00144;mir-199;AAWZ01010560.1/117412-117513 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 75.8 bits (38), Expect = 9e-14
Identities = 68/77 (88%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 14 gcctgcccagtgttcagactacctgttcatcaggctaca--gctgaacagtagtctgcac 71
|||| |||||||||||||||||||||||| | |||||| | || ||||||||||||||
Sbjct: 16 gccttcccagtgttcagactacctgttcaggaagctacaaaggtgtacagtagtctgcac 75
Query: 72 attggttaggctgggct 88
||||||||| |||||||
Sbjct: 76 attggttagactgggct 92
>RF00144;mir-199;AANH01005434.1/24491-24590 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 73.8 bits (37), Expect = 4e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 19 cccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacattggtt 78
||||||||||||||||||||||||| | ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattatcatactggtgtacagtagtctgcacattggtt 80
Query: 79 aggctgggc 87
|| ||||||
Sbjct: 81 agactgggc 89
>RF00144;mir-199;AANU01122656.1/5080-5181 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 71.9 bits (36), Expect = 1e-12
Identities = 65/72 (90%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 19 cccagtgttcagactacctgttcatcaggcta-cagc-tgaacagtagtctgcacattgg 76
|||||||||||||||||||||||| ||||| || | || |||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaggctctcaacgtgtacagtagtctgcacattgg 80
Query: 77 ttaggctgggct 88
||||||||||||
Sbjct: 81 ttaggctgggct 92
>RF00144;mir-199;AAHY01076446.1/77391-77291 10090:Mus musculus
(house mouse)
Length = 101
Score = 71.9 bits (36), Expect = 1e-12
Identities = 65/73 (89%), Gaps = 5/73 (6%)
Strand = Plus / Plus
Query: 19 cccagtgttcagactacctgttcatcaggct---acagctgaacagtagtctgcacattg 75
|||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaggctgggaca--tgtacagtagtctgcacattg 78
Query: 76 gttaggctgggct 88
|||||||||||||
Sbjct: 79 gttaggctgggct 91
>RF00144;mir-199;AAHX01020762.1/285-187 10116:Rattus norvegicus
(Norway rat)
Length = 99
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 58 acagtagtctgcacattggttaggctgggctggg 91
||||||||||||||||||||||||||||||||||
Sbjct: 59 acagtagtctgcacattggttaggctgggctggg 92
>RF00144;mir-199;ABRQ01043924.1/1531-1628 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 58 acagtagtctgcacattggttaggctgggctggg 91
||||||||||||||||||||||||||||||||||
Sbjct: 59 acagtagtctgcacattggttaggctgggctggg 92
>RF00144;mir-199;AAWR02017790.1/21207-21308 9796:Equus caballus
(horse)
Length = 102
Score = 65.9 bits (33), Expect = 9e-11
Identities = 63/72 (87%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 18 gcccagtgttcagactacctgttcatcaggctac--agctgaacagtagtctgcacattg 75
||||||||||||||||||||||||| |||| | | || ||||||||||||||||||
Sbjct: 20 gcccagtgttcagactacctgttcagggggctccgaatgtgtacagtagtctgcacattg 79
Query: 76 gttaggctgggc 87
||||||||||||
Sbjct: 80 gttaggctgggc 91
>RF00144;mir-199;CAAB01000803.1/18144-18243 31033:Takifugu
rubripes
Length = 100
Score = 65.9 bits (33), Expect = 9e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 19 cccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacattggtt 78
||||||||||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattgtcatactggtgtacagtagtctgcacattggtt 80
Query: 79 aggctgggc 87
|| ||||||
Sbjct: 81 agactgggc 89
>RF00144;mir-199;BAAF04061048.1/5562-5661 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 65.9 bits (33), Expect = 9e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 19 cccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacattggtt 78
||||||||||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattgtcatactggtgtacagtagtctgcacattggtt 80
Query: 79 aggctgggc 87
|| ||||||
Sbjct: 81 agactgggc 89
>RF00144;mir-199;AADN02026635.1/12137-12039 9031:Gallus gallus
(chicken)
Length = 99
Score = 63.9 bits (32), Expect = 4e-10
Identities = 70/79 (88%), Gaps = 4/79 (5%)
Strand = Plus / Plus
Query: 16 ctgcccagtgttcagactacctgttcatcaggctac-agct-gaacagtagtctgcacat 73
||||||||||||||||||||||||||| | |||| || | | ||||||||||||||||
Sbjct: 17 ctgcccagtgttcagactacctgttcagga--ctacgagattgtacagtagtctgcacat 74
Query: 74 tggttaggctgggctggga 92
||||||||||| |||||||
Sbjct: 75 tggttaggctgtgctggga 93
>RF00144;mir-199;ABPJ01035359.1/311-410 35575:Mchenga conophoros
Length = 100
Score = 63.9 bits (32), Expect = 4e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 14 gcctgcccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacat 73
||||||||||||||||||||||||||||| | | | || ||||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacat 75
Query: 74 tggttaggctgg 85
||||||||||||
Sbjct: 76 tggttaggctgg 87
>RF00144;mir-199;AANH01004681.1/136443-136347 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 63.9 bits (32), Expect = 4e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 14 gcctgcccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacat 73
||||||||||||||||||||||||||||| | | | || ||||||||||||||||
Sbjct: 15 gcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacat 74
Query: 74 tggttaggctgg 85
||||||||||||
Sbjct: 75 tggttaggctgg 86
>RF00144;mir-199;BAAE01013242.1/84-183 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 63.9 bits (32), Expect = 4e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 14 gcctgcccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacat 73
||||||||||||||||||||||||||||| | | | || ||||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacat 75
Query: 74 tggttaggctgg 85
||||||||||||
Sbjct: 76 tggttaggctgg 87
>RF00144;mir-199;AAFR03049221.1/24866-24967 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 58 acagtagtctgcacattggttaggctgggct 88
|||||||||||||||||||||||||||||||
Sbjct: 62 acagtagtctgcacattggttaggctgggct 92
>RF00144;mir-199;ABDC01156515.1/926-825 30608:Microcebus murinus
(gray mouse lemur)
Length = 102
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 58 acagtagtctgcacattggttaggctgggct 88
|||||||||||||||||||||||||||||||
Sbjct: 62 acagtagtctgcacattggttaggctgggct 92
>RF00144;mir-199;AAQQ01144563.1/4013-4113 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 101
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 58 acagtagtctgcacattggttaggctgggct 88
|||||||||||||||||||||||||||||||
Sbjct: 61 acagtagtctgcacattggttaggctgggct 91
>RF00144;mir-199;AAKN02056464.1/56518-56417 10141:Cavia porcellus
(domestic guinea pig)
Length = 102
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 58 acagtagtctgcacattggttaggctgggct 88
|||||||||||||||||||||||||||||||
Sbjct: 62 acagtagtctgcacattggttaggctgggct 92
>RF00144;mir-199;CT563248.9/85109-85010 7955:Danio rerio
(zebrafish)
Length = 100
Score = 60.0 bits (30), Expect = 6e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 19 cccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacattggtt 78
|||||||||||||||||||||||| | ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggatcatactggtgtacagtagtctgcacattggtt 80
Query: 79 ag 80
||
Sbjct: 81 ag 82
>RF00144;mir-199;CAAB01001079.1/26340-26439 31033:Takifugu
rubripes
Length = 100
Score = 60.0 bits (30), Expect = 6e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 19 cccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacattggtt 78
|||||||||||||||||||||||| | ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggattttactggtgtacagtagtctgcacattggtt 80
Query: 79 ag 80
||
Sbjct: 81 ag 82
>RF00144;mir-199;ABQF01040854.1/79152-79251 59729:Taeniopygia
guttata
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 19 cccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacattggtt 78
|||||||||||||||||||||||| | | | | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctgcacattggtt 80
Query: 79 aggctgggc 87
|| ||||||
Sbjct: 81 agactgggc 89
>RF00144;mir-199;CU138550.14/80968-81064 7955:Danio rerio
(zebrafish)
Length = 97
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 14 gcctgcccagtgttcagactacctgttca 42
|||||||||||||||||||||||||||||
Sbjct: 15 gcctgcccagtgttcagactacctgttca 43
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 acagtagtctgcacattggttaggctgg 85
||||||||||||||||||||||||||||
Sbjct: 59 acagtagtctgcacattggttaggctgg 86
>RF00144;mir-199;AAHX01053598.1/14659-14563 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 58 acagtagtctgcacattggttaggctgggct 88
||||||||| |||||||||||||||||||||
Sbjct: 57 acagtagtcagcacattggttaggctgggct 87
>RF00144;mir-199;CAAK05055714.1/3303-3204 7955:Danio rerio
(zebrafish)
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 acagtagtctgcacattggttaggctg 84
|||||||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttaggctg 86
>RF00144;mir-199;AAVX01256932.1/291-390 7868:Callorhinchus milii
(ghost shark)
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 18 gcccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacattggt 77
||||||||||||||||||||||||| | || | || ||||||||||||||||||||
Sbjct: 20 gcccagtgttcagactacctgttcaggacaatattgttgtacagtagtctgcacattggt 79
Query: 78 tag 80
|||
Sbjct: 80 tag 82
>RF00144;mir-199;BAAF04076833.1/4729-4828 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 19 cccagtgttcagactacctgttcatcaggctacagctgaacagtagtctgcacattggtt 78
|||||||||||||||||||||||| | | | | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagaatcttcctggtgtacagtagtctgcacattggtt 80
Query: 79 ag 80
||
Sbjct: 81 ag 82
>RF00144;mir-199;ABRO01249229.1/2824-2923 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 58 acagtagtctgcacattggttaggctggg 86
||||||||||||||| |||||||||||||
Sbjct: 61 acagtagtctgcacactggttaggctggg 89
>RF00144;mir-199;ABRQ01040059.1/381-480 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 acagtagtctgcacattggttaggc 82
|||||||||||||||||||||||||
Sbjct: 61 acagtagtctgcacattggttaggc 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 cccagtgttcagactacctgttca 42
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
>RF00144;mir-199;ABRT010369364.1/546-644 9478:Tarsius syrichta
(Philippine tarsier)
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 gcccagtgttcagactacctgtt 40
|||||||||||||||||||||||
Sbjct: 19 gcccagtgttcagactacctgtt 41
