miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus trichocarpa
Length = 88
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 98 tcctcggaccaggcttcattcctctcaat 126
|||||||||||||||||||||| ||||||
Sbjct: 60 tcctcggaccaggcttcattcccctcaat 88
>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
Length = 94
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 98 tcctcggaccaggcttcattcctctcaat 126
|||||||||||||||||||||| ||||||
Sbjct: 66 tcctcggaccaggcttcattcccctcaat 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 25 tttgaggggaatgttgtctggttcaagg 52
||||||||||||||||| ||||||||||
Sbjct: 1 tttgaggggaatgttgtttggttcaagg 28
>RF00075;mir-166;AM485267.2/15969-16057 29760:Vitis vinifera
Length = 89
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 101 tcggaccaggcttcattcctctcaa 125
|||||||||||||||||||||||||
Sbjct: 64 tcggaccaggcttcattcctctcaa 88
>RF00075;mir-166;AASG02003407.1/927-777 3988:Ricinus communis
(castor bean)
Length = 151
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 aggggaatgttgtctggttcaagg 52
||||||||||||||||||||||||
Sbjct: 5 aggggaatgttgtctggttcaagg 28
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 96 tctcctcggaccaggcttcattcc 119
||||||||||||||||||||||||
Sbjct: 121 tctcctcggaccaggcttcattcc 144
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 99 cctcggaccaggcttcattcctctcaat 126
||||||||||||||||||||| ||||||
Sbjct: 123 cctcggaccaggcttcattcccctcaat 150
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctctc 123
||||||||||||||||||||||||
Sbjct: 72 ctcggaccaggcttcattcctctc 95
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 27 tgaggggaatgttgtctggttcaaggtc 54
|||| |||||||||||||||||||||||
Sbjct: 3 tgagtggaatgttgtctggttcaaggtc 30
>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
Length = 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 27 tgaggggaatgttgtctggttcaaggtc 54
|||| |||||||||||||||||||||||
Sbjct: 1 tgagtggaatgttgtctggttcaaggtc 28
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 27 tgaggggaatgttgtctggttcaaggtc 54
|||| |||||||||||||||||||||||
Sbjct: 3 tgagtggaatgttgtctggttcaaggtc 30
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 27 tgaggggaatgttgtctggttcaaggtc 54
|||| |||||||||||||||||||||||
Sbjct: 3 tgagtggaatgttgtctggttcaaggtc 30
>RF00075;mir-166;ABIM01001512.1/1249-1387 3649:Carica papaya
(papaya)
Length = 139
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 25 tttgaggggaatgttgtctggttcaag 51
||||||| |||||||||||||||||||
Sbjct: 1 tttgaggtgaatgttgtctggttcaag 27
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 25 tttgaggggaatgttgtctggttcaaggtca 55
||||||||||||||||||||| || ||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgaggtca 31
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 25 tttgaggggaatgttgtctggttcaaggtca 55
||||||||||||||||||||| || ||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgaggtca 31
>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 ttgaggggaatgttgtctggttc 48
|||||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggttc 24
>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
cotton)
Length = 113
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctc 121
||||||||||||||||||||||
Sbjct: 87 ctcggaccaggcttcattcctc 108
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctctcaa 125
|||||||||||||||||||| |||||
Sbjct: 99 ctcggaccaggcttcattcccctcaa 124
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 101 tcggaccaggcttcattcctctcaat 126
||||||||||||||||||| ||||||
Sbjct: 97 tcggaccaggcttcattcccctcaat 122
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 101 tcggaccaggcttcattcctctcaat 126
||||||||||||||||||| ||||||
Sbjct: 120 tcggaccaggcttcattcccctcaat 145
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctctcaa 125
|||||||||||||||||||| |||||
Sbjct: 74 ctcggaccaggcttcattcccctcaa 99
>RF00075;mir-166;CU302248.6/62232-62044 3880:Medicago truncatula
(barrel medic)
Length = 189
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 101 tcggaccaggcttcattcctctcaat 126
||||||||||||||||||| ||||||
Sbjct: 164 tcggaccaggcttcattcccctcaat 189
>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
(barrel medic)
Length = 181
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctc 121
||||||||||||||||||||||
Sbjct: 155 ctcggaccaggcttcattcctc 176
>RF00075;mir-166;CT009488.4/103389-103285 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctc 121
||||||||||||||||||||||
Sbjct: 79 ctcggaccaggcttcattcctc 100
>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
Length = 166
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctc 121
||||||||||||||||||||||
Sbjct: 140 ctcggaccaggcttcattcctc 161
>RF00075;mir-166;BABK01014008.1/1327-1223 34305:Lotus japonicus
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 98 tcctcggaccaggcttcattcc 119
||||||||||||||||||||||
Sbjct: 77 tcctcggaccaggcttcattcc 98
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 26 ttgaggggaatgttgtctggttcaaggtca 55
|||||||||||||||||||| || ||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgaggtca 31
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctctcaa 125
|||||||||||||||||||| |||||
Sbjct: 131 ctcggaccaggcttcattcccctcaa 156
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctctcaa 125
|||||||||||||||||||| |||||
Sbjct: 93 ctcggaccaggcttcattcccctcaa 118
>RF00075;mir-166;AY664417.1/307265-307178 4577:Zea mays
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctc 121
||||||||||||||||||||||
Sbjct: 62 ctcggaccaggcttcattcctc 83
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctctcaa 125
|||||||||||||||||||| |||||
Sbjct: 71 ctcggaccaggcttcattcccctcaa 96
>RF00075;mir-166;ABXC01000331.1/255164-255261 4558:Sorghum bicolor
(sorghum)
Length = 98
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctctcaa 125
|||||||||||||||||||| |||||
Sbjct: 72 ctcggaccaggcttcattcccctcaa 97
>RF00075;mir-166;ABXC01005455.1/25016-25131 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctc 121
||||||||||||||||||||||
Sbjct: 90 ctcggaccaggcttcattcctc 111
>RF00075;mir-166;ABXC01000758.1/126828-126715 4558:Sorghum bicolor
(sorghum)
Length = 114
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 99 cctcggaccaggcttcattcctctca 124
||||||||||||||||||||| ||||
Sbjct: 87 cctcggaccaggcttcattcccctca 112
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctctcaa 125
|||||||||||||||||||| |||||
Sbjct: 71 ctcggaccaggcttcattcccctcaa 96
>RF00075;mir-166;AC027660.2/136704-136618 39947:Oryza sativa
Japonica Group
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctctcaa 125
|||||||||||||||||||| |||||
Sbjct: 61 ctcggaccaggcttcattcccctcaa 86
>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
Indica Group
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctctcaa 125
|||||||||||||||||||| |||||
Sbjct: 61 ctcggaccaggcttcattcccctcaa 86
>RF00075;mir-166;AY551232.1/7-113 4530:Oryza sativa (rice)
Length = 107
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 29 aggggaatgttgtctggttcaaggtc 54
|||||| |||||||||||||||||||
Sbjct: 5 aggggattgttgtctggttcaaggtc 30
>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
Japonica Group
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctc 121
||||||||||||||||||||||
Sbjct: 109 ctcggaccaggcttcattcctc 130
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 ctcggaccaggcttcattcctctcaa 125
|||||||||||||||||||| |||||
Sbjct: 77 ctcggaccaggcttcattcccctcaa 102
>RF00075;mir-166;ABEU01001509.1/37358-37431 145481:Physcomitrella
patens subsp. patens
Length = 74
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 99 cctcggaccaggcttcattcctctca 124
||||||||||||||||||||| ||||
Sbjct: 47 cctcggaccaggcttcattcccctca 72
