miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
(rhesus monkey)
Length = 77
Score = 129 bits (65), Expect = 8e-30
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 15 actcagagtacatacttctttatgtacccatatgaacatacaatgctatggaatgtaaag 74
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 actcagagtacatacttctttatgtacccatatgaacatacaaggctatggaatgtaaag 60
Query: 75 aagtacgtatttt 87
||||| |||||||
Sbjct: 61 aagtatgtatttt 73
>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 129 bits (65), Expect = 8e-30
Identities = 75/77 (97%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 15 actcagagtacatacttctttatgtacccatatgaacatacaatgctatggaatgtaaag 74
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 actcagagtacatacttctttatgtacccatatgaacata-aatgctatggaatgtaaag 59
Query: 75 aagtacgtatttttggt 91
||||| |||||||||||
Sbjct: 60 aagtatgtatttttggt 76
>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 77
Score = 129 bits (65), Expect = 8e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 20 gagtacatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagta 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gagtacatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagta 65
Query: 80 cgtattttt 88
||||||||
Sbjct: 66 tgtattttt 74
>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
(European shrew)
Length = 77
Score = 121 bits (61), Expect = 2e-27
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 19 agagtacatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagt 78
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5 agagtacatacttctttatgtacccatatgaacatagaatgctatggaatgtaaagaagt 64
Query: 79 acgtatttttggt 91
| ||| |||||||
Sbjct: 65 atgtacttttggt 77
>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 109 bits (55), Expect = 7e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 19 agagtacatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagt 78
|||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 5 agagcacatacttctttatgtacccatatgaagatacaatgttatggaatgtaaagaagt 64
Query: 79 acgtatttttg 89
| |||||||||
Sbjct: 65 atgtatttttg 75
>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 81.8 bits (41), Expect = 2e-15
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 22 gtacatacttctttatgtacccatatgaacata-caatgctatggaatgtaaagaagtac 80
||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||
Sbjct: 8 gtacatacttctttatgtacccatatgaagatatgaaagctatggaatgtaaagaagtat 67
Query: 81 gtatt 85
|||||
Sbjct: 68 gtatt 72
>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 79.8 bits (40), Expect = 6e-15
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 24 acatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtacgta 83
|||||||||||||| ||||||||||||| || | ||||||||||||||||||||| |||
Sbjct: 10 acatacttctttatatacccatatgaacttaaca-gctatggaatgtaaagaagtatgta 68
Query: 84 tttttggt 91
||||||||
Sbjct: 69 tttttggt 76
>RF00103;mir-1;CAAB01000636.1/82977-83054 31033:Takifugu rubripes
Length = 78
Score = 77.8 bits (39), Expect = 3e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 22 gtacatacttctttatgtacccatatgaacatacaat-gctatggaatgtaaagaagtac 80
||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct: 8 gtacatacttctttatgtacccatatggacatatgataactatggaatgtaaagaagtat 67
Query: 81 gtatttttggt 91
||||| |||||
Sbjct: 68 gtattcttggt 78
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
mouse)
Length = 77
Score = 69.9 bits (35), Expect = 6e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 24 acatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtacgta 83
|||||||||||||| | ||||||||||| | | | ||||||||||||||||||||| |||
Sbjct: 10 acatacttctttatatgcccatatgaacctgctaagctatggaatgtaaagaagtatgta 69
Query: 84 ttt 86
|||
Sbjct: 70 ttt 72
>RF00103;mir-1;AAQR01319106.1/4854-4930 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 67.9 bits (34), Expect = 2e-11
Identities = 51/54 (94%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 14 tactcagagtacatacttctttatgtacccatatg-aacatacaatgctatgga 66
||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 1 tactcagag-acatacttcgttatgtacccatatgaaacatacaatgctatgga 53
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 60.0 bits (30), Expect = 6e-09
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 25 catacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtacgtat 84
|||||||||| || | |||||||||| || | |||||||||||||||||||||| ||||
Sbjct: 11 catacttcttcatatgcccatatgaa-atgctttgctatggaatgtaaagaagtatgtat 69
Query: 85 ttttgg 90
||||||
Sbjct: 70 ttttgg 75
>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
(chicken)
Length = 77
Score = 56.0 bits (28), Expect = 9e-08
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 24 acatacttctttatgtacccatatgaacata-caatgctatggaatgtaaagaagtacgt 82
|||||||||||||| | ||||||||||| | |||| |||||||||||||||||||| ||
Sbjct: 10 acatacttctttatatgcccatatgaacctggcaat-ctatggaatgtaaagaagtatgt 68
Query: 83 attt 86
||||
Sbjct: 69 attt 72
>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 50.1 bits (25), Expect = 6e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 24 acatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtacgta 83
|||||||||||||| |||||||| || | | | ||||||||||||||||||||| |||
Sbjct: 10 acatacttctttataatcccatatggacctgctaagctatggaatgtaaagaagtatgta 69
Query: 84 t 84
|
Sbjct: 70 t 70
>RF00103;mir-1;AAGJ02015940.1/12697-12776 7668:Strongylocentrotus
purpuratus
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 ctatggaatgtaaagaagtacgtatt 85
|||||||||||||||||||| |||||
Sbjct: 49 ctatggaatgtaaagaagtatgtatt 74
>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 gctatggaatgtaaagaagtacgtat 84
||||||||||||||||||||| ||||
Sbjct: 44 gctatggaatgtaaagaagtatgtat 69
