miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AAJJ01000198.1/34838-34768 7070:Tribolium
castaneum (red flour beetle)
Length = 71
Score = 123 bits (62), Expect = 3e-28
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 3 tacatctaccctgtagatccgaatttgtttgacataaggcgacaaattcggttctagaga 62
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 2 tacatctaccctgtagatccgaatttgtttgaaatcaggcgacaaattcggttctagaga 61
Query: 63 ggtttgtgtg 72
||||||||||
Sbjct: 62 ggtttgtgtg 71
>RF00104;mir-10;ABJB011126277.1/3833-3903 6945:Ixodes scapularis
(black-legged tick)
Length = 71
Score = 91.7 bits (46), Expect = 1e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 3 tacatctaccctgtagatccgaatttgtttgacataaggcgacaaattcggttctagaga 62
|||||||||||||||||||||||||||| || | ||| | |||||||||||||||||||
Sbjct: 2 tacatctaccctgtagatccgaatttgtctgcaacaagactacaaattcggttctagaga 61
Query: 63 ggtttgtgtg 72
||||||||||
Sbjct: 62 ggtttgtgtg 71
>RF00104;mir-10;AAPT01019387.1/166139-166214 7222:Drosophila
grimshawi
Length = 76
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 43 gacaaattcggttctagagaggtttgtgtg 72
||||||||||||||||||||||||||||||
Sbjct: 47 gacaaattcggttctagagaggtttgtgtg 76
>RF00104;mir-10;ABKQ02021837.1/5843-5769 377270:Anopheles gambiae
S
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 44 acaaattcggttctagagaggtttgtgtg 72
|||||||||||||||||||||||||||||
Sbjct: 47 acaaattcggttctagagaggtttgtgtg 75
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3 tacatctaccctgtagatccgaatttgtttga 34
|||||| |||||||||||||||||||||||||
Sbjct: 2 tacatccaccctgtagatccgaatttgtttga 33
>RF00104;mir-10;AAPU01011054.1/176581-176658 7230:Drosophila
mojavensis
Length = 78
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 43 gacaaattcggttctagagaggtttgtgtgg 73
||||||||||||||||||||||||| |||||
Sbjct: 47 gacaaattcggttctagagaggtttatgtgg 77
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 tctaccctgtagatccgaatttgtt 31
|||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgtt 30
>RF00104;mir-10;AAQB01008633.1/164536-164458 7260:Drosophila
willistoni
Length = 79
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 tctaccctgtagatccgaatttgttt 32
||||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgttt 31
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 43 gacaaattcggttctagagaggttt 67
|||||||||||||||||||||||||
Sbjct: 48 gacaaattcggttctagagaggttt 72
>RF00104;mir-10;AC165428.1/216964-216881 7668:Strongylocentrotus
purpuratus
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 2 ttacatctaccctgtagatccgaatttgt 30
||||||| |||||||||||||||||||||
Sbjct: 1 ttacatcaaccctgtagatccgaatttgt 29
>RF00104;mir-10;AY303234.1/14458-14526 39110:Sphoeroides nephelus
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 accctgtagatccgaatttgtttgaca 36
||||||||||||||||||||| |||||
Sbjct: 9 accctgtagatccgaatttgtgtgaca 35
>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 taccctgtagatccgaatttgt 30
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
(chicken)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 taccctgtagatccgaatttgt 30
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 taccctgtagatccgaatttgt 30
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AB232920.1/58331-58253 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 atctaccctgtagatccgaatttgtttgac 35
|||||||||||||||||| |||||| ||||
Sbjct: 5 atctaccctgtagatccggatttgtgtgac 34
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 taccctgtagatccgaatttgt 30
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 taccctgtagatccgaatttgt 30
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
floridae (Florida lancelet)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 taccctgtagatccgaatttgt 30
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;CAAB01000183.1/83579-83654 31033:Takifugu rubripes
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 accctgtagatccgaatttgt 30
|||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgt 29
>RF00104;mir-10;EF594314.1/41875-41950 8153:Haplochromis burtoni
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 accctgtagatccgaatttgt 30
|||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgt 29
>RF00104;mir-10;AANH01009874.1/6075-5997 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 atctaccctgtagatccgaatttgt 30
|||||||||||||||||| ||||||
Sbjct: 5 atctaccctgtagatccggatttgt 29
