miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00664;mir-223;AY866256.1/405-514 9544:Macaca mulatta (rhesus
monkey)
Length = 110
Score = 172 bits (87), Expect = 6e-43
Identities = 96/99 (96%)
Strand = Plus / Plus
Query: 1 gcctcctgcagtgccacgctccgggtatttgacaagctgagttggacactccatgtggta 60
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 5 gcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccgtgtggta 64
Query: 61 gagtgtcagtttgtcaaataccccaagtgcggcacatgc 99
|||||||||||||||||||||||||||||||||| ||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtgcggcatatgc 103
>RF00664;mir-223;AAKN02052886.1/11821-11930 10141:Cavia porcellus
(domestic guinea pig)
Length = 110
Score = 167 bits (84), Expect = 4e-41
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 7 tgcagtgccacgctccgggtatttgacaagctgagttggacactccatgtggtagagtgt 66
|||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tgcagtaccacactccgtgtatttgacaagctgagttggacactccatgtggtagagtgt 70
Query: 67 cagtttgtcaaataccccaagtgcggcacatgccta 102
||||||||||||||||||||||||||||||||||||
Sbjct: 71 cagtttgtcaaataccccaagtgcggcacatgccta 106
>RF00664;mir-223;AAIY01539231.1/5018-5127 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 110
Score = 151 bits (76), Expect = 2e-36
Identities = 94/100 (94%)
Strand = Plus / Plus
Query: 3 ctcctgcagtgccacgctccgggtatttgacaagctgagttggacactccatgtggtaga 62
||||||||||||||||||||| |||||||| || |||| || ||||||||||||||||||
Sbjct: 7 ctcctgcagtgccacgctccgtgtatttgataaactgaattagacactccatgtggtaga 66
Query: 63 gtgtcagtttgtcaaataccccaagtgcggcacatgccta 102
||||||||||||||||||||||||||||||| ||||||||
Sbjct: 67 gtgtcagtttgtcaaataccccaagtgcggctcatgccta 106
>RF00664;mir-223;AL831708.9/47299-47408 10090:Mus musculus (house
mouse)
Length = 110
Score = 145 bits (73), Expect = 1e-34
Identities = 91/97 (93%)
Strand = Plus / Plus
Query: 6 ctgcagtgccacgctccgggtatttgacaagctgagttggacactccatgtggtagagtg 65
|||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 10 ctgcagtgtcacgctccgtgtatttgacaagctgagttggacactctgtgtggtagagtg 69
Query: 66 tcagtttgtcaaataccccaagtgcggcacatgccta 102
|||||||||||||||||||||||| ||| ||||||||
Sbjct: 70 tcagtttgtcaaataccccaagtgtggctcatgccta 106
>RF00664;mir-223;AALT01652710.1/2269-2378 42254:Sorex araneus
(European shrew)
Length = 110
Score = 143 bits (72), Expect = 5e-34
Identities = 90/96 (93%)
Strand = Plus / Plus
Query: 9 cagtgccacgctccgggtatttgacaagctgagttggacactccatgtggtagagtgtca 68
||||| ||| ||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 13 cagtgtcacactccgcgtatttgacaagctgaattggacactccatgtggtagagtgtca 72
Query: 69 gtttgtcaaataccccaagtgcggcacatgcctaac 104
|||||||||||||||||||||||||| ||| |||||
Sbjct: 73 gtttgtcaaataccccaagtgcggcatatgtctaac 108
>RF00664;mir-223;AAFR03059733.1/784-675 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 110
Score = 133 bits (67), Expect = 5e-31
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 4 tcctgcagtgccacgctccgggtatttgacaagctgagttggacactccatgtggtagag 63
|||| ||||||||| ||||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct: 8 tccttcagtgccacactccgtgtatttgacaagctgagttggacactccgtgtcgtagag 67
Query: 64 tgtcagtttgtcaaataccccaagtgcggca 94
|||||||||||||||||||||||||| ||||
Sbjct: 68 tgtcagtttgtcaaataccccaagtgaggca 98
>RF00664;mir-223;AANN01684196.1/3693-3802 9365:Erinaceus europaeus
(western European hedgehog)
Length = 110
Score = 131 bits (66), Expect = 2e-30
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 2 cctcctgcagtgccacgctccgggtatttgacaagctgagttggacactccatgtggtag 61
|||| |||| || ||||||||| ||||||||||||||||||| |||||||||| ||| ||
Sbjct: 6 cctcttgcaatgtcacgctccgtgtatttgacaagctgagttagacactccatatggaag 65
Query: 62 agtgtcagtttgtcaaataccccaagtgcggcacatgc 99
||||||||||||||||||||||||||||||||| ||||
Sbjct: 66 agtgtcagtttgtcaaataccccaagtgcggcatatgc 103
>RF00664;mir-223;AAPN01125420.1/2697-2806 9258:Ornithorhynchus
anatinus (platypus)
Length = 110
Score = 111 bits (56), Expect = 2e-24
Identities = 81/88 (92%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 8 gcagtgccacgctccgggtatttgacaagctgagttggacactccatgtgg-tagagtgt 66
|||||||| ||||||| |||||||||||||||||||||||||||| ||||| | ||||||
Sbjct: 13 gcagtgccgcgctccgtgtatttgacaagctgagttggacactccgtgtggtttgagtgt 72
Query: 67 cagtttgtcaaataccccaagtgcggca 94
||||||||||||||||| ||||| ||||
Sbjct: 73 cagtttgtcaaataccctaagtgaggca 100
>RF00664;mir-223;ABRQ01452788.1/6932-7041 9813:Procavia capensis
(cape rock hyrax)
Length = 110
Score = 107 bits (54), Expect = 3e-23
Identities = 90/102 (88%)
Strand = Plus / Plus
Query: 1 gcctcctgcagtgccacgctccgggtatttgacaagctgagttggacactccatgtggta 60
|||||||||||||| | ||| || |||||||| ||||||||||||||||| ||||| |||
Sbjct: 5 gcctcctgcagtgctatgctacgtgtatttgataagctgagttggacacttcatgttgta 64
Query: 61 gagtgtcagtttgtcaaataccccaagtgcggcacatgccta 102
|||||||||||||||||||| | |||| | |||||||||||
Sbjct: 65 cagtgtcagtttgtcaaatactctaagtacagcacatgccta 106
>RF00664;mir-223;AAQR01675055.1/2409-2518 30611:Otolemur garnettii
(small-eared galago)
Length = 110
Score = 99.6 bits (50), Expect = 7e-21
Identities = 83/94 (88%)
Strand = Plus / Plus
Query: 1 gcctcctgcagtgccacgctccgggtatttgacaagctgagttggacactccatgtggta 60
||||||||||||||||| ||| | |||||||||| ||||||| | |||||| | | ||
Sbjct: 5 gcctcctgcagtgccacactctgtgtatttgacaggctgagtggaacactcagtttaata 64
Query: 61 gagtgtcagtttgtcaaataccccaagtgcggca 94
||||||||||||||||||||||||||||||||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtgcggca 98
>RF00664;mir-223;AADN02013066.1/26830-26939 9031:Gallus gallus
(chicken)
Length = 110
Score = 93.7 bits (47), Expect = 4e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 25 gtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacccc 84
||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||
Sbjct: 29 gtatttgacaagctgagtttgacactcagtctggcagagtgtcagtttgtcaaatacccc 88
Query: 85 aagtgcggcac 95
||||| |||||
Sbjct: 89 aagtgaggcac 99
>RF00664;mir-223;BAAF04035315.1/6268-6159 8090:Oryzias latipes
(Japanese medaka)
Length = 110
Score = 81.8 bits (41), Expect = 2e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 25 gtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacccc 84
||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 29 gtatttgacaagctgagttggacactctatctctgtgagtgtcagtttgtcaaatacccc 88
Query: 85 aagtg 89
|||||
Sbjct: 89 aagtg 93
>RF00664;mir-223;ABQF01018329.1/6784-6677 59729:Taeniopygia
guttata
Length = 108
Score = 77.8 bits (39), Expect = 3e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 25 gtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacccc 84
|||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||
Sbjct: 29 gtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacccc 87
Query: 85 aagtgcggcac 95
||||| |||||
Sbjct: 88 aagtgaggcac 98
>RF00664;mir-223;AANH01000582.1/391608-391499 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 110
Score = 73.8 bits (37), Expect = 4e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 25 gtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacccc 84
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 29 gtatttgacaagctgagttggacactctgtatctctgagtgtcagtttgtcaaatacccc 88
Query: 85 aagtg 89
|||||
Sbjct: 89 aagtg 93
>RF00664;mir-223;CAAB01000001.1/273051-272942 31033:Takifugu
rubripes
Length = 110
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 61 gagtgtcagtttgtcaaataccccaagtg 89
|||||||||||||||||||||||||||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtg 93
>RF00664;mir-223;BX465863.11/57630-57739 7955:Danio rerio
(zebrafish)
Length = 110
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 63 gtgtcagtttgtcaaataccccaag 87
|||||||||||||||||||||||||
Sbjct: 67 gtgtcagtttgtcaaataccccaag 91
