miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 135 bits (68), Expect = 1e-31
Identities = 78/80 (97%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 16 ttggggtgaggtagtaggttgtatagttttaggg-tcatacccttcctgtcagataacta 74
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 1 ttggggtgaggtagtaggttgtatagttttaggggtcatgcccttcctgtcagataacta 60
Query: 75 tacaacttactgtctttcct 94
||||||||||||||||||||
Sbjct: 61 tacaacttactgtctttcct 80
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 129 bits (65), Expect = 8e-30
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 16 ttggggtgaggtagtaggttgtatagttttagggtcatacccttcctgtcagataactat 75
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |||||
Sbjct: 1 ttggggtgaggtagtaggttgtatagttttagggtcattcccatgctgtcagatgactat 60
Query: 76 acaacttactgtctttcctga 96
|||||||||||||||||||||
Sbjct: 61 acaacttactgtctttcctga 81
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 113 bits (57), Expect = 5e-25
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 16 ttggggtgaggtagtaggttgtatagttttagggtcatacccttcctgtcagataactat 75
||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||
Sbjct: 1 ttgggatgaggtagtaggttgtatagttttagggttacacccttccggtcagataactat 60
Query: 76 acaacttactgtctttcctga 96
|||| |||||||||||||||
Sbjct: 61 acaatctactgtctttcctga 81
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 81.8 bits (41), Expect = 2e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 16 ttggggtgaggtagtaggttgtatagttttagggtcatacccttcctgtcagataactat 75
||||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct: 1 ttgggatgaggtagtaggttgtatagttttagggtcacacccacactgggagataactat 60
Query: 76 acaacttactgtctttc 92
|||| |||||||||||
Sbjct: 61 acaatctactgtctttc 77
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 75.8 bits (38), Expect = 1e-13
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 17 tggggtgaggtagtaggttgtatagttttagggtcatacccttcctgtcagataactata 76
|||| ||||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct: 2 tgggatgaggtagtagattgtatagttttagggtcatacccggtcttggagataactata 61
Query: 77 caacttactgtctttcct 94
||| |||||||||||||
Sbjct: 62 caatctactgtctttcct 79
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 73.8 bits (37), Expect = 4e-13
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 17 tggggtgaggtagtaggttgtatagttttagggtcatacccttcctgtcagataactata 76
|||| ||||||||||||||||||||||||| |||||||||| ||| ||||||||||
Sbjct: 2 tgggatgaggtagtaggttgtatagttttacggtcatacccgcactgggagataactatt 61
Query: 77 caacttactgtctttcc 93
||| ||||||||||||
Sbjct: 62 aaacctactgtctttcc 78
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 63.9 bits (32), Expect = 4e-10
Identities = 70/80 (87%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 17 tggggtgaggtagtaggttgtatag-ttttagggtcatacccttc-ctgtcagataacta 74
|||| |||||||||||||||||||| ||||||||||| |||| | ||| |||||||||
Sbjct: 2 tgggatgaggtagtaggttgtatagtttttagggtcacacccaccactgggagataacta 61
Query: 75 tacaacttactgtctttcct 94
||||| |||||||||||||
Sbjct: 62 tacaatctactgtctttcct 81
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 16 ttggggtgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||||||||
Sbjct: 1 ttggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 16 ttggggtgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||||||||
Sbjct: 1 ttggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 16 ttggggtgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||||||||
Sbjct: 1 ttggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAF04080487.1/5225-5305 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 16 ttggggtgaggtagtaggttgtatagttttagggtcatacccttcctgtcagataactat 75
||||| ||||||||||| ||||||||||||||| ||| ||| ||| ||||||||||
Sbjct: 1 ttgggatgaggtagtagtttgtatagttttaggatcacaccagatctgggagataactat 60
Query: 76 acaacttactgtctttc 92
||| | |||||||||||
Sbjct: 61 acagcctactgtctttc 77
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 22 tgaggtagtaggttgtatagttttagggtcataccc 57
||||||||||| ||||||||||||||||| ||||||
Sbjct: 7 tgaggtagtagattgtatagttttagggttataccc 42
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 18 ggggtgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||||||
Sbjct: 3 ggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 gggtgaggtagtaggttgtatagttt 44
||||||||||||||||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 gggtgaggtagtaggttgtatagttt 44
||||||||||||||||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaggttgtatagtttt 45
||||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttt 30
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 gggtgaggtagtaggttgtatagttt 44
||||||||||||||||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
Length = 73
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgtatagttt 28
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgtatagttt 28
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgtatagttt 28
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
(zebrafish)
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaggttgtatagtt 43
||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ggtgaggtagtaggttgtatagtt 43
||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtt 28
>RF00027;let-7;AAZX01015868.1/1070-988 7425:Nasonia vitripennis
(jewel wasp)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 gggtgaggtagtaggttgtatagt 42
||||||||||||||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtatagt 27
>RF00027;let-7;AADG05003176.1/75207-75290 7460:Apis mellifera
(honey bee)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 gggtgaggtagtaggttgtatagt 42
||||||||||||||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtatagt 27
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagttt 28
>RF00027;let-7;AAPN01367903.1/288-368 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 46.1 bits (23), Expect = 9e-05
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 22 tgaggtagtaggttgtatagttttagggtcatacccttcctgtcagataactatacaact 81
||||||||||| ||| |||||| | |||||| ||| ||||| | |||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtggggtcacggcctccctgtgtgctaactatacaatc 66
Query: 82 tactgtctttcctga 96
|||||||||||||||
Sbjct: 67 tactgtctttcctga 81
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgaggtagtaggttgtatagttt 44
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 9e-05
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 22 tgaggtagtaggttgtatagttttagggtcatacccttcctgtcagataactatacaact 81
||||||||||| |||||||||| | ||| ||| | |||| | |||||||||| |||
Sbjct: 7 tgaggtagtagattgtatagttgtgaggttgtacacctcctctgagataactatgcaatc 66
Query: 82 tactgtctttcctga 96
|||||||||||||||
Sbjct: 67 tactgtctttcctga 81
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgaggtagtaggttgtatagtt 43
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABLA01021413.1/563-640 51029:Heterodera glycines
Length = 78
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgaggtagtaggttgtatagtt 43
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AAQA01000457.1/25368-25290 6279:Brugia malayi
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgaggtagtaggttgtatagtt 43
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABKE01000556.1/121-205 54126:Pristionchus pacificus
Length = 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgaggtagtaggttgtatagtt 43
||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtt 27
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaggttgtatagttttagggt 50
|||||||||||| |||||||||| ||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtagggt 35
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgaggtagtaggttgtatagtt 43
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgaggtagtaggttgtatagtt 43
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgaggtagtaggttgtatagtt 43
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 21 gtgaggtagtaggttgtatagttttagggt 50
||||||||||||||||| |||||| |||||
Sbjct: 6 gtgaggtagtaggttgtgtagtttcagggt 35
