miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00237;mir-9;BAAF04134102.1/794-855 8090:Oryzias latipes
          (Japanese medaka)
          Length = 62

 Score = 83.8 bits (42), Expect = 4e-16
 Identities = 57/62 (91%)
 Strand = Plus / Plus

                                                                      
Query: 22 atctttggttatctagctgtatgagtgatgtacattcttcataaggctagataaccgaaa 81
          |||||||||||||||||||||||||||  |||  |||||||||| |||||||||||||||
Sbjct: 1  atctttggttatctagctgtatgagtgccgtattttcttcataaagctagataaccgaaa 60

            
Query: 82 gt 83
          ||
Sbjct: 61 gt 62




>RF00237;mir-9;AAGV020387958.1/714-775 9361:Dasypus novemcinctus
          (nine-banded armadillo)
          Length = 62

 Score = 69.9 bits (35), Expect = 6e-12
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                 
Query: 22 atctttggttatctagctgtatgagtgatgtacattcttcataaggctagataac 76
          ||||||||||||||||||||||||||| |||  | ||||||||| ||||||||||
Sbjct: 1  atctttggttatctagctgtatgagtggtgtggagtcttcataaagctagataac 55




>RF00237;mir-9;ABVD01485145.1/30-90 9358:Choloepus hoffmanni
          (Hoffmann's two-fingered sloth)
          Length = 61

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 56/62 (90%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                      
Query: 22 atctttggttatctagctgtatgagtgatgtacattcttcataaggctagataaccgaaa 81
          ||||||||||||||||||||||||||| |||  | || |||||| |||||||||||||||
Sbjct: 1  atctttggttatctagctgtatgagtggtgtggagtc-tcataaagctagataaccgaaa 59

            
Query: 82 gt 83
          ||
Sbjct: 60 gt 61




>RF00237;mir-9;BAAF04020747.1/88-147 8090:Oryzias latipes
          (Japanese medaka)
          Length = 60

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 55/62 (88%), Gaps = 2/62 (3%)
 Strand = Plus / Plus

                                                                      
Query: 22 atctttggttatctagctgtatgagtgatgtacattcttcataaggctagataaccgaaa 81
          ||||||||||||||||||||||||||| | | |  || |||||| |||||||||||||||
Sbjct: 1  atctttggttatctagctgtatgagtgttctgc--tcgtcataaagctagataaccgaaa 58

            
Query: 82 gt 83
          ||
Sbjct: 59 gt 60




>RF00237;mir-9;ABRR01432464.1/48-109 30538:Lama pacos (alpaca)
          Length = 62

 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                
Query: 30 ttatctagctgtatgagtgatgtacattcttcataaggctagataaccgaaagt 83
          ||||||||||||||||||| |||  | | ||||||| |||||||||||||||||
Sbjct: 9  ttatctagctgtatgagtggtgtggagtattcataaagctagataaccgaaagt 62




>RF00237;mir-9;AAPU01011594.1/225879-225819 7230:Drosophila
          mojavensis
          Length = 61

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 23 tctttggttatctagctgtatgagtgat 50
          ||||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtgat 29




>RF00237;mir-9;ABJB010367147.1/2213-2272 6945:Ixodes scapularis
          (black-legged tick)
          Length = 60

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 23 tctttggttatctagctgtatgagtgat 50
          ||||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtgat 29




>RF00237;mir-9;ABIR01000787.1/71736-71795 6334:Trichinella
          spiralis
          Length = 60

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 23 tctttggttatctagctgtatgagtg 48
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;AAPN01432088.1/257-198 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 60

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 23 tctttggttatctagctgtatgagtg 48
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;ABRQ01039829.1/2882-2943 9813:Procavia capensis
          (cape rock hyrax)
          Length = 62

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 23 tctttggttatctagctgtatgagtg 48
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;BAAE01106217.1/407-468 8090:Oryzias latipes
          (Japanese medaka)
          Length = 62

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 23 tctttggttatctagctgtatgagtg 48
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;BAAF04047241.1/1745-1804 8090:Oryzias latipes
          (Japanese medaka)
          Length = 60

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 22 atctttggttatctagctgtatgagt 47
          ||||||||||||||||||||||||||
Sbjct: 1  atctttggttatctagctgtatgagt 26




>RF00237;mir-9;ABLF01047176.1/4611-4545 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 67

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 23 tctttggttatctagctgtatgagtg 48
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;AAAB01008960.1/1144939-1144878 180454:Anopheles
          gambiae str. PEST
          Length = 62

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 23 tctttggttatctagctgtatgagtg 48
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;AAST01027169.1/135-76 7240:Drosophila simulans
          Length = 60

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 25 tttggttatctagctgtatgagtgat 50
          ||||||||||||||||||||||||||
Sbjct: 4  tttggttatctagctgtatgagtgat 29




>RF00237;mir-9;CAAK05014843.1/1888-1946 7955:Danio rerio
          (zebrafish)
          Length = 59

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 23 tctttggttatctagctgtatgagt 47
          |||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagt 26




>RF00237;mir-9;AAVX01065791.1/2124-2183 7868:Callorhinchus milii
          (ghost shark)
          Length = 60

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 23 tctttggttatctagctgtatgagt 47
          |||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagt 26




>RF00237;mir-9;AAJJ01000398.1/19121-19058 7070:Tribolium castaneum
          (red flour beetle)
          Length = 64

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 23 tctttggttatctagctgtatgagt 47
          |||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagt 26




>RF00237;mir-9;AAQA01000025.1/15457-15396 6279:Brugia malayi
          Length = 62

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 24 ctttggttatctagctgtatgagt 47
          ||||||||||||||||||||||||
Sbjct: 3  ctttggttatctagctgtatgagt 26




>RF00237;mir-9;ABEP02027847.1/93613-93673 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 61

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 23 tctttggttatctagctgtatgag 46
          ||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgag 25




>RF00237;mir-9;ABKE01012786.1/839-779 54126:Pristionchus pacificus
          Length = 61

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 23 tctttggttatctagctgtatga 45
          |||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatga 24




>RF00237;mir-9;ABRT010326462.1/47-105 9478:Tarsius syrichta
          (Philippine tarsier)
          Length = 59

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 57 tcttcataaggctagataaccgaaagt 83
          ||||||||| |||||||||||||||||
Sbjct: 33 tcttcataaagctagataaccgaaagt 59




>RF00237;mir-9;AAGU02809341.1/1530-1589 9785:Loxodonta africana
          (African savanna elephant)
          Length = 60

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 50/57 (87%), Gaps = 4/57 (7%)
 Strand = Plus / Plus

                                                                   
Query: 28 ggttatctagctgtatgagtgatgtacattc-ttcataaggctagataaccgaaagt 83
          |||||||||||||||||||||   ||  ||| ||||||| |||||||||||||||||
Sbjct: 7  ggttatctagctgtatgagtg---tattttccttcataaagctagataaccgaaagt 60




>RF00237;mir-9;AAVX01083387.1/420-360 7868:Callorhinchus milii
          (ghost shark)
          Length = 61

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 23 tctttggttatctagctgtatgagtg 48
          ||||||||| ||||||||||||||||
Sbjct: 2  tctttggttttctagctgtatgagtg 27




>RF00237;mir-9;AAZO01004437.1/24877-24818 121224:Pediculus humanus
          corporis (human body louse)
          Length = 60

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 23 tctttggttatctagctgtatg 44
          ||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatg 23