miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;CAAE01014581.1/5651544-5651616 99883:Tetraodon
nigroviridis
Length = 73
Score = 113 bits (57), Expect = 6e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 27 agtctaacagaatcctttctgcacaaactaggatactttgacactcagtgtgcggaaatg 86
||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
Sbjct: 1 agtctaacagaatcctttctgcacaaactagaatgatttgacactcagtgtgcggaaacg 60
Query: 87 cttctgctccact 99
|||||||||||||
Sbjct: 61 cttctgctccact 73
>RF00693;mir-147;ABPJ01071875.1/477-549 35575:Mchenga conophoros
Length = 73
Score = 113 bits (57), Expect = 6e-25
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 27 agtctaacagaatcctttctgcacaaactaggatactttgacactcagtgtgcggaaatg 86
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 agtctaacagaatcgtttctgcacaaactaggacgctttgacactcagtgtgcggaaatg 60
Query: 87 cttctgctc 95
|||||||||
Sbjct: 61 cttctgctc 69
>RF00693;mir-147;CAAB01000277.1/126166-126238 31033:Takifugu
rubripes
Length = 73
Score = 97.6 bits (49), Expect = 3e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 27 agtctaacagaatcctttctgcacaaactaggatactttgacactcagtgtgcggaaatg 86
|||||||||||||||||||||||| |||||| || ||| |||||||||||||||||| |
Sbjct: 1 agtctaacagaatcctttctgcaccaactagaatgatttaacactcagtgtgcggaaacg 60
Query: 87 cttctgctccact 99
|||||||||||||
Sbjct: 61 cttctgctccact 73
>RF00693;mir-147;BAAF04016950.1/22862-22934 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 95.6 bits (48), Expect = 1e-19
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 27 agtctaacagaatcctttctgcacaaactaggatactttgacactcagtgtgcggaaatg 86
|||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct: 1 agtctaacagaatcctttctgcacaaactaggatgtttttacggtcagtgtgcggaaatg 60
Query: 87 cttctgct 94
||||||||
Sbjct: 61 cttctgct 68
>RF00693;mir-147;AANH01000229.1/71291-71222 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 70
Score = 67.9 bits (34), Expect = 3e-11
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 32 aacagaatcctttctgcacaaactaggatactttgacactcagtgtgcggaaatgcttct 91
|||||||||||||||||||| ||| | | ||||||||| ||||||||||||||||||
Sbjct: 6 aacagaatcctttctgcacacactttg---cgttgacactcggtgtgcggaaatgcttct 62
Query: 92 gctccact 99
||||||||
Sbjct: 63 gctccact 70
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 tcagtgtgcggaaatgcttctgct 94
||||||||||||||||||||||||
Sbjct: 42 tcagtgtgcggaaatgcttctgct 65
