miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00257;mir-194;BAAE01291848.1/854-770 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 93.7 bits (47), Expect = 4e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 17 ctgggtgtaacagcaactccatgtggaagatgcctctgttccagtggagatgctgttacc 76
|||| |||||||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct: 11 ctggatgtaacagcaactccatgtggaagctgtgtctgttccagtggaggtgctgttacc 70
Query: 77 tgcagag 83
|||||||
Sbjct: 71 tgcagag 77
>RF00257;mir-194;AANH01000564.1/249696-249610 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 83.8 bits (42), Expect = 4e-16
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 8 tggtgctctctgggtgtaacagcaactccatgtggaagatgcctct-gttccagtggaga 66
||||| || |||| |||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 2 tggtgttcgctggatgtaacagcaactccatgtggaagctgcgtccagttccagtggagg 61
Query: 67 tgctgttacctgcagagg 84
||||||||||||||||||
Sbjct: 62 tgctgttacctgcagagg 79
>RF00257;mir-194;CAAB01000046.1/113108-113195 31033:Takifugu
rubripes
Length = 88
Score = 60.0 bits (30), Expect = 5e-09
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 17 ctgggtgtaacagcaactccatgtggaagatgcctct--gttccagtggagatgctgtta 74
|||| |||||||||||||||||||||||| || | | ||||||||||| ||||||||
Sbjct: 11 ctggatgtaacagcaactccatgtggaagctgtatgtgagttccagtggaagtgctgtta 70
Query: 75 cctgcagag 83
|||||||||
Sbjct: 71 cctgcagag 79
>RF00257;mir-194;AAFC03033465.1/1804-1720 9913:Bos taurus (cattle)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 49/54 (90%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 22 tgtaacagcaactccatgtggaagatgcctct-gttccagtggagatgctgtta 74
|||||||||||||||||||||||| | ||||| |||||||||| | ||||||||
Sbjct: 16 tgtaacagcaactccatgtggaag-tacctctagttccagtggggctgctgtta 68
>RF00257;mir-194;ABRO01037016.1/11275-11359 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 49/54 (90%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 22 tgtaacagcaactccatgtggaagatgcctctg-ttccagtggagatgctgtta 74
|||||||||||||||||||||||| |||| ||| ||||||||| | ||||||||
Sbjct: 16 tgtaacagcaactccatgtggaag-tgccactgtttccagtggggctgctgtta 68
>RF00257;mir-194;AAIY01186786.1/2214-2298 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 22 tgtaacagcaactccatgtggaagatgcctctgttccagtggagatgctgttac 75
|||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtggactgtgtctaatttccagtggagatgctgttac 69
>RF00257;mir-194;FP017294.8/72257-72172 7955:Danio rerio
(zebrafish)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 8 tggtgctctctgggtgtaacagcaactccatgtggaagatgc 49
|||||||| |||||||||||||| |||||||||||| ||||
Sbjct: 1 tggtgctcgctgggtgtaacagccgctccatgtggaaaatgc 42
>RF00257;mir-194;CAAA01010876.1/4210-4293 10090:Mus musculus
(house mouse)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 gggtgtaacagcaactccatgtgga 43
|||||||||||||||||||||||||
Sbjct: 12 gggtgtaacagcaactccatgtgga 36
>RF00257;mir-194;BX248510.4/109392-109307 7955:Danio rerio
(zebrafish)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 22 tgtaacagcaactccatgtggaagatgcctctgttccagtggagatgctgttacctgcag 81
|||||||||||||||||||||||| | | | ||||||||||| ||||||| | |||||
Sbjct: 16 tgtaacagcaactccatgtggaaggtttgtgtcttccagtggagctgctgttgcgtgcag 75
Query: 82 a 82
|
Sbjct: 76 a 76
>RF00257;mir-194;AAPN01023116.1/334-252 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 tgtaacagcaactccatgtggaag 45
||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggaag 38
>RF00257;mir-194;AAGV020435009.1/201-286 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 tgtaacagcaactccatgtggaag 45
||||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtggaag 39
>RF00257;mir-194;ABRN01259841.1/10643-10728 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 tgtaacagcaactccatgtggaag 45
||||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtggaag 39
>RF00257;mir-194;AC127556.4/107031-107116 10090:Mus musculus
(house mouse)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 tgtaacagcaactccatgtggaag 45
||||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtggaag 39
>RF00257;mir-194;ABRO01051746.1/2439-2355 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ggtgtaacagcaactccatgtgga 43
||||||||||||||||||||||||
Sbjct: 13 ggtgtaacagcaactccatgtgga 36
>RF00257;mir-194;ABRQ01130986.1/8094-8179 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 tgtaacagcaactccatgtggaag 45
||||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtggaag 39
>RF00257;mir-194;AAWZ01016377.1/110498-110415 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 gtgtaacagcaactccatgtggaa 44
||||||||||||||||||||||||
Sbjct: 15 gtgtaacagcaactccatgtggaa 38
>RF00257;mir-194;AALT01482191.1/6150-6232 42254:Sorex araneus
(European shrew)
Length = 83
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 gtgtaacagcaactccatgtgga 43
|||||||||||||||||||||||
Sbjct: 14 gtgtaacagcaactccatgtgga 36
>RF00257;mir-194;AANN01206173.1/2762-2845 9365:Erinaceus europaeus
(western European hedgehog)
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 gtgtaacagcaactccatgtgga 43
|||||||||||||||||||||||
Sbjct: 14 gtgtaacagcaactccatgtgga 36
>RF00257;mir-194;AAFC03085979.1/1394-1478 9913:Bos taurus (cattle)
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 48/55 (87%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 22 tgtaacagcaactccatgtggaagatgcctc-tgttccagtggagatgctgttac 75
|||||||||||||||||||||| ||| || |||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgcgtcaatttccagtggagatgctgttac 69
>RF00257;mir-194;AY866323.1/164-248 9545:Macaca nemestrina
(pig-tailed macaque)
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 gtgtaacagcaactccatgtgga 43
|||||||||||||||||||||||
Sbjct: 14 gtgtaacagcaactccatgtgga 36
>RF00257;mir-194;AAYZ01125558.1/495-410 9978:Ochotona princeps
(American pika)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tgtaacagcaactccatgtggaa 44
|||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtggaa 38
>RF00257;mir-194;AAPN01089469.1/14273-14191 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgtaacagcaactccatgtgga 43
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>RF00257;mir-194;AAIY01704218.1/1027-942 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgtaacagcaactccatgtgga 43
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;AAGU02014260.1/2999-2915 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgtaacagcaactccatgtgga 43
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>RF00257;mir-194;AADN02012132.1/23965-23883 9031:Gallus gallus
(chicken)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgtaacagcaactccatgtgga 43
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
