miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 115 bits (58), Expect = 1e-25
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 16 gcttttagcctctttacagtgctgccttgtagaatcatgttcaagcagcattgtacaggg 75
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 5 gcttttagcctctttacagtgctgccttgtctgatcaggttcaagcagcattgtacaggg 64
Query: 76 ctatgacagcatag 89
||||||||||||||
Sbjct: 65 ctatgacagcatag 78
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 85.7 bits (43), Expect = 1e-16
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 16 gcttttagcctctttacagtgctgccttgtagaatcatgttcaagcagcattgtacaggg 75
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 5 gcttttagcctctttacagtgctgccttgtcttctcgcgttcaagcagcattgtacaggg 64
Query: 76 ctatgac 82
|||||||
Sbjct: 65 ctatgac 71
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 79.8 bits (40), Expect = 6e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 22 agcctctttacagtgctgccttgtagaatcatgttcaagcagcattgtacagggctatga 81
||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct: 11 agcctctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 16 gcttttagcctctttacagtgctgccttgtagaatcatgttcaagcagcattgtacaggg 75
||||| |||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 5 gctttgagcctctttacaatgctgccttgtagacccagaatcaagcagcattgtacaggg 64
Query: 76 ctatgacagca 86
|||||| ||||
Sbjct: 65 ctatgaaagca 75
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 73.8 bits (37), Expect = 4e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 17 cttttagcctctttacagtgctgccttgtagaatcatgttcaagcagcattgtacagggc 76
|||| ||| |||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct: 6 ctttcagcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggc 65
Query: 77 tatga 81
|||||
Sbjct: 66 tatga 70
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 71.9 bits (36), Expect = 1e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 26 tctttacagtgctgccttgtagaatcatgttcaagcagcattgtacagggctatga 81
|||||||||||||| ||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 15 tctttacagtgctgacttgtagcatccggatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 65.9 bits (33), Expect = 9e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 15 tgcttttagcctctttacagtgctgccttgtagaatcatgttcaagcagcattgtacagg 74
|||||| ||| ||||||||||| |||||||| | || |||||||||||||||||||||
Sbjct: 4 tgctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagg 63
Query: 75 gctat 79
|||||
Sbjct: 64 gctat 68
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 63.9 bits (32), Expect = 4e-10
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 15 tgcttttagcctctttacagtgctgccttgtagaat-catgttcaagcagcattgtacag 73
|||||| ||| |||||||||||||||||||| | | ||||| |||||||||||||||||
Sbjct: 4 tgctttcagcttctttacagtgctgccttgttgcgttcatgt-caagcagcattgtacag 62
Query: 74 ggctatga 81
||||||||
Sbjct: 63 ggctatga 70
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 63.9 bits (32), Expect = 4e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 26 tctttacagtgctgccttgtagaatcatgttcaagcagcattgtacagggctatga 81
|||||||||||||||||||| | || | ||||||||||||||||||||||||||
Sbjct: 15 tctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 63.9 bits (32), Expect = 4e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 22 agcctctttacagtgctgccttgtagaatcatgttcaagcagcattgtacagggctatga 81
||||||||||| |||||||||||| | || | ||||||||||||||||||||||||||
Sbjct: 11 agcctctttacggtgctgccttgtggcgtctcgatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 56.0 bits (28), Expect = 9e-08
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 30 tacagtgctgccttgtagaatcatgttcaagcagcattgtacagggctatga 81
|||||||||||||||| | || | ||||||||||||||||||||||||||
Sbjct: 19 tacagtgctgccttgttgcatgtggatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 56.0 bits (28), Expect = 9e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 22 agcctctttacagtgctgccttgtagaatcatgttcaagcagcattgtacagggctatga 81
|||||||||| ||||||||||| | || || ||||||||||||||||||||||||||
Sbjct: 11 agcctctttatgatgctgccttgtggcgtcttgatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 56.0 bits (28), Expect = 9e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 26 tctttacagtgctgccttgtagaatcatgttcaagcagcattgtacagggctatga 81
|||||||||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct: 15 tctttacagtgctgccttgtgacgtgaagatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 26 tctttacagtgctgccttgtagaatcatgttcaagcagcattgtacagggctat 79
||||||||||| |||||||| | || | ||||||||||||||||||||||||
Sbjct: 15 tctttacagtgttgccttgtggcatggcgatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 26 tctttacagtgctgccttgtagaatcatgttcaagcagcattgtacagggctat 79
||||||||||| |||||||||| | | ||||||||||||||||||||||||
Sbjct: 15 tctttacagtgttgccttgtagcttggagatcaagcagcattgtacagggctat 68
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 30 tacagtgctgccttgtagaatcatgttcaagcagcattgtacagggct 77
||||||| |||||||||| | || ||||||||||||||||||||||
Sbjct: 19 tacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 66
