miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00671;mir-138;CAAE01014577.1/2727918-2727843 99883:Tetraodon
nigroviridis
Length = 76
Score = 95.6 bits (48), Expect = 1e-19
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcagaccgccacagtgcaaggaccggctacttcccaacaccagg 81
|||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccgccgcagtccaaggaccggctacttcccaacaccagg 67
>RF00671;mir-138;AANH01002440.1/5358-5433 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 95.6 bits (48), Expect = 1e-19
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 15 ggcgagacagctggtgttgtgaatcagaccgccacagtgcaaggaccggctacttcccaa 74
|||| |||||||||||||||||||||| |||||||| | ||||| ||||||||||||||
Sbjct: 1 ggcgggacagctggtgttgtgaatcaggccgccacaatcaaaggaacggctacttcccaa 60
Query: 75 caccaggttctcaccc 90
||||||| ||||||||
Sbjct: 61 caccagggtctcaccc 76
>RF00671;mir-138;BAAE01294625.1/198-123 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 95.6 bits (48), Expect = 1e-19
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 20 gacagctggtgttgtgaatcagaccgccacagtgcaaggaccggctacttcccaacacca 79
|||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||
Sbjct: 6 gacagctggtgttgtgaatcaggccgccacagtcaagggaccggctacttcccaacacca 65
Query: 80 ggttctca 87
|| |||||
Sbjct: 66 gggtctca 73
>RF00671;mir-138;CAAK05039157.1/16818-16742 7955:Danio rerio
(zebrafish)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 20 gacagctggtgttgtgaatcagaccgcc 47
|||||||||||||||||||||| |||||
Sbjct: 6 gacagctggtgttgtgaatcaggccgcc 33
>RF00671;mir-138;AAVX01130926.1/1014-940 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 22 cagctggtgttgtgaatcagaccgccacagtgcaaggaccggctacttcccaacaccagg 81
|||||||||||||||||||| |||||| | | | ||||||||||||| ||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccgccata-tttaccgaccggctacttcacaacaccagg 66
>RF00671;mir-138;AC124778.4/108490-108415 10090:Mus musculus
(house mouse)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 gacagctggtgttgtgaatcag 41
||||||||||||||||||||||
Sbjct: 6 gacagctggtgttgtgaatcag 27
