miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 149 bits (75), Expect = 2e-35
Identities = 84/87 (96%)
Strand = Plus / Minus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgag 113
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 90 tcccaaaataagtgtcttaactttgtactaactttagtacaaagttgtactaggcttgag 31
Query: 114 acacttattttgagacgaagggagtac 140
||||||||||||||||| |||||||||
Sbjct: 30 acacttattttgagacggagggagtac 4
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 112 agacacttattttgagacgaagggagtacct 142
|||||||||||||| |||| |||||||||||
Sbjct: 74 agacacttattttgggacggagggagtacct 104
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 123 bits (62), Expect = 9e-28
Identities = 80/86 (93%)
Strand = Plus / Minus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgag 113
||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 90 tcccaaaataaatgtctcaactttgtattaactttagtacaaagttgtactaagcttgag 31
Query: 114 acacttattttgagacgaagggagta 139
|||||||||||| |||| ||||||||
Sbjct: 30 acacttattttgggacggagggagta 5
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 115 bits (58), Expect = 2e-25
Identities = 79/86 (91%)
Strand = Plus / Minus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgag 113
||||||||||| ||||| ||||||||| |||||||||| ||| |||||||||||||||||
Sbjct: 90 tcccaaaataaatgtctcaactttgtattaactttagtacaaggttgtactaagcttgag 31
Query: 114 acacttattttgagacgaagggagta 139
|||||||||||| |||| ||||||||
Sbjct: 30 acacttattttgggacggagggagta 5
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 109 bits (55), Expect = 1e-23
Identities = 67/71 (94%)
Strand = Plus / Minus
Query: 67 gtcttaactttgtactaactttagtgcaaagttgtactaagcttgagacacttattttga 126
|||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 77 gtctcaactttgtactaaatttagtgcaaagttgtactaaggttgagacacttattttgg 18
Query: 127 gacgaagggag 137
|||||||||||
Sbjct: 17 gacgaagggag 7
Score = 81.8 bits (41), Expect = 3e-15
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgag 113
||||||||||| ||||| || ||||||||||||||||| ||||||||||||||| |||||
Sbjct: 138 tcccaaaataactgtctcaagtttgtactaactttagtacaaagttgtactaaggttgag 79
Query: 114 a 114
|
Sbjct: 78 a 78
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 105 bits (53), Expect = 2e-22
Identities = 86/97 (88%)
Strand = Plus / Plus
Query: 43 tactcctttcatcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgta 102
|||||||| | ||||||||||||||||| || ||| ||||||| |||| ||||||||||
Sbjct: 5 tactccttccgtcccaaaataagtgtctcaattttacactaactctagtacaaagttgta 64
Query: 103 ctaagcttgagacacttattttgagacgaagggagta 139
||||| ||||||||||||||||| |||| ||||||||
Sbjct: 65 ctaaggttgagacacttattttgggacggagggagta 101
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 103 bits (52), Expect = 8e-22
Identities = 76/84 (90%)
Strand = Plus / Minus
Query: 56 ccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgagac 115
||||||||||||||| |||||||||||| || || | |||||||||||||||||||||||
Sbjct: 88 ccaaaataagtgtctcaactttgtactagctctactacaaagttgtactaagcttgagac 29
Query: 116 acttattttgagacgaagggagta 139
| ||||||||||| | ||||||||
Sbjct: 28 agttattttgagatggagggagta 5
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 103 bits (52), Expect = 8e-22
Identities = 64/68 (94%)
Strand = Plus / Minus
Query: 42 atactcctttcatcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgt 101
||||||| | ||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 109 atactccctccatcccaaaataagtgtctcaactttgtactaactttagtacaaagttgt 50
Query: 102 actaagct 109
||||||||
Sbjct: 49 actaagct 42
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 99.6 bits (50), Expect = 1e-20
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgag 113
||||||||||||||||| |||||||||||| || |||| |||| || ||||||||||||
Sbjct: 90 tcccaaaataagtgtctcaactttgtactagctgtagtacaaaattacactaagcttgag 31
Query: 114 acacttattttgagacgaagggagta 139
|||||||||||| |||| ||||||||
Sbjct: 30 acacttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 109 ttgagacacttattttgagacgaagggagta 139
||||||||||||||||| |||| ||||||||
Sbjct: 71 ttgagacacttattttgggacggagggagta 101
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 97.6 bits (49), Expect = 5e-20
Identities = 85/97 (87%)
Strand = Plus / Minus
Query: 43 tactcctttcatcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgta 102
|||||| | ||||||||||||||||||| |||||||||||| || |||| |||| || ||
Sbjct: 101 tactccctccatcccaaaataagtgtctcaactttgtactatctctagtacaaattttta 42
Query: 103 ctaagcttgagacacttattttgagacgaagggagta 139
||||||| |||||||||||||| |||| ||||||||
Sbjct: 41 ctaagctcaagacacttattttgggacggagggagta 5
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 97.6 bits (49), Expect = 5e-20
Identities = 86/97 (88%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 43 tactcctttcatcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgta 102
|||||| | ||||||||||||| ||||| |||||||||||| || |||| ||||||||||
Sbjct: 100 tactccctccatcccaaaataactgtctcaactttgtactagctctagtacaaagttgta 41
Query: 103 ctaagcttgagacacttattttgagacgaagggagta 139
| ||| |||||||| ||||||||||||| ||||||||
Sbjct: 40 caaag-ttgagacagttattttgagacggagggagta 5
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 95.6 bits (48), Expect = 2e-19
Identities = 76/84 (90%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 57 caaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgagaca 116
|||||||||| |||||| ||| ||||| ||| ||||||||||| ||||||||||||||||
Sbjct: 19 caaaataagtttcttaattttatactagctt-agtgcaaagttatactaagcttgagaca 77
Query: 117 cttattttgagacgaagggagtac 140
||||||||||||| |||||||||
Sbjct: 78 attattttgagacggagggagtac 101
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 93.7 bits (47), Expect = 8e-19
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgag 113
||||||||||||||||| |||||||||||| ||||| | ||||||||||||| |||||
Sbjct: 16 tcccaaaataagtgtctcaactttgtactagctttaatacaaagttgtactagagttgag 75
Query: 114 acacttattttgaga 128
|||||||||||||||
Sbjct: 76 acacttattttgaga 90
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 91.7 bits (46), Expect = 3e-18
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgag 113
||||||||||||||||| | ||||||||||||| |||| ||| |||||||||| |||||
Sbjct: 89 tcccaaaataagtgtctca-ctttgtactaactctagtataaaattgtactaaggttgag 31
Query: 114 acacttattttgagacgaagggagta 139
|||||||||||| |||| ||||||||
Sbjct: 30 acacttattttgggacggagggagta 5
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 110 tgagacacttattttgagacgaagggagta 139
|||||||||||||||| |||| ||||||||
Sbjct: 71 tgagacacttattttgggacggagggagta 100
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 91.7 bits (46), Expect = 3e-18
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgag 113
||||||||||||||||| |||||||||||| | |||| ||||||||||||| |||||||
Sbjct: 90 tcccaaaataagtgtctcaactttgtactagttctagtacaaagttgtactaggcttgag 31
Query: 114 acacttattttgagacgaagggagta 139
||| |||||||| |||| || |||||
Sbjct: 30 acagttattttgggacggagtgagta 5
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 91.7 bits (46), Expect = 3e-18
Identities = 88/102 (86%)
Strand = Plus / Plus
Query: 39 ttgatactcctttcatcccaaaataagtgtcttaactttgtactaactttagtgcaaagt 98
|||||||||| | | ||||||||||||||||| |||||| ||||| || |||| |||| |
Sbjct: 1 ttgatactccatccgtcccaaaataagtgtctcaactttatactagctatagtacaaact 60
Query: 99 tgtactaagcttgagacacttattttgagacgaagggagtac 140
|||| |||| |||||||| |||||||| |||| |||||||||
Sbjct: 61 tgtattaagtttgagacagttattttgggacggagggagtac 102
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 87.7 bits (44), Expect = 5e-17
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 56 ccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgagac 115
||||||||||||||| || ||||||||| || |||| ||||||||||||||||||||||
Sbjct: 18 ccaaaataagtgtctcaaatttgtactagctctagtacaaagttgtactaagcttgagat 77
Query: 116 acttattttgagacgaagggagta 139
| |||||||| ||| ||||||||
Sbjct: 78 agttattttggaacggagggagta 101
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 87.7 bits (44), Expect = 5e-17
Identities = 74/84 (88%)
Strand = Plus / Minus
Query: 57 caaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgagaca 116
|||||||| ||||| ||| |||||||| || |||| |||| |||||||||| || |||||
Sbjct: 87 caaaataactgtctcaacattgtactagctctagtacaaaattgtactaagattaagaca 28
Query: 117 cttattttgagacgaagggagtac 140
|||||||||||||| |||||||||
Sbjct: 27 cttattttgagacggagggagtac 4
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 85.7 bits (43), Expect = 2e-16
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 42 atactcctttcatcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgt 101
||||||| | ||||||||||||||||| |||| |||||| || ||||||| |||||| |
Sbjct: 102 atactccctccatcccaaaataagtgtgttaattttgtattagctttagtataaagttat 43
Query: 102 actaagcttgagacacttatttt 124
|||||| ||||||||||||||||
Sbjct: 42 actaagattgagacacttatttt 20
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 79.8 bits (40), Expect = 1e-14
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 57 caaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgagaca 116
|||||||| ||||| ||||||||| || || |||| |||||||||||||||||| |||||
Sbjct: 87 caaaataactgtctcaactttgtattagctctagtacaaagttgtactaagcttaagaca 28
Query: 117 cttatttt 124
||||||||
Sbjct: 27 cttatttt 20
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 109 ttgagacacttattttgagacgaagggagta 139
|||||||| ||||||||||||| ||||||||
Sbjct: 71 ttgagacagttattttgagacggagggagta 101
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 77.8 bits (39), Expect = 5e-14
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 57 caaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgagaca 116
|||||||| ||||| |||||||||||| || |||| |||||||||||||||| ||| |||
Sbjct: 87 caaaataaatgtctcaactttgtactagctctagtacaaagttgtactaagcatgaaaca 28
Query: 117 cttattttgagacgaagggagta 139
||||||||| | | ||||||||
Sbjct: 27 attattttgaaatggagggagta 5
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 75.8 bits (38), Expect = 2e-13
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgag 113
||||||||||| ||||| ||||||||| || |||||| |||| ||||| ||||||| ||
Sbjct: 90 tcccaaaataactgtctcaactttgtattagatttagtacaaaattgtattaagcttaag 31
Query: 114 acacttattttgagacgaagggagta 139
|||||||||||| ||| ||||||||
Sbjct: 30 acacttattttggaacggagggagta 5
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 75.8 bits (38), Expect = 2e-13
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgag 113
||||||||||| ||||| |||||||||||| || |||| |||| |||||||| ||| ||
Sbjct: 90 tcccaaaataactgtctcaactttgtactagctctagtacaaaattgtactacgctcaag 31
Query: 114 acacttattttgagacgaagggagta 139
|||||||||||| ||| ||||||||
Sbjct: 30 acacttattttggaacggagggagta 5
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 73.8 bits (37), Expect = 7e-13
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 56 ccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgagac 115
||||||||| |||||||||||||||||| ||||| | ||| || ||||||| || ||||
Sbjct: 18 ccaaaataactgtcttaactttgtactagctttactataaatttatactaagtttaagac 77
Query: 116 acttattttgagacgaagggagtac 140
| |||||||| |||| |||||||||
Sbjct: 78 atttattttgcgacggagggagtac 102
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 69.9 bits (35), Expect = 1e-11
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgag 113
||||||||||| |||||||||||||| ||| || |||| ||| || |||||||||| ||
Sbjct: 90 tcccaaaataattgtcttaactttgttctagctctagtataaaattatactaagcttaag 31
Query: 114 acacttatttt 124
|||||||||||
Sbjct: 30 acacttatttt 20
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 67.9 bits (34), Expect = 5e-11
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgag 113
|||||||||| |||||||||||||||||| || || ||| ||||||||||||| ||
Sbjct: 90 tcccaaaatatctgtcttaactttgtactagctcatgtataaaattgtactaagcttaag 31
Query: 114 acacttattttgagacgaaggg 135
|||||||||||| |||| ||||
Sbjct: 30 acacttattttgggacggaggg 9
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 63.9 bits (32), Expect = 7e-10
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 57 caaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgagaca 116
|||||||||| ||| |||||| |||| || |||| |||||||||||||| |||||| |
Sbjct: 87 caaaataagtatctcaactttacactagctctagtataaagttgtactaagtttgagaaa 28
Query: 117 cttattttgagacgaagggagtac 140
|||||||| |||| |||||||||
Sbjct: 27 gttattttgggacggagggagtac 4
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 109 ttgagacacttattttgagacgaagggagta 139
|||||| ||||||||||||||| ||||||||
Sbjct: 71 ttgagatacttattttgagacggagggagta 101
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 61.9 bits (31), Expect = 3e-09
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttagtgcaaagttg 100
|||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct: 89 tcccaaaataagtgactcaactttgtactaaagttagtgcaaagttg 43
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 52 catcccaaaataagtgtcttaactttgtactaactttag 90
|||||||||||||||| || |||||||||||||||||||
Sbjct: 119 catcccaaaataagtgactcaactttgtactaactttag 81
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 54 tcccaaaataagtgtcttaactttgtactaacttt 88
|||||||||||||| || |||||||||||||||||
Sbjct: 16 tcccaaaataagtgactcaactttgtactaacttt 50
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 60.0 bits (30), Expect = 1e-08
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgag 113
||||||||||| ||||| |||||| ||||| | |||| ||| || |||||||||| ||
Sbjct: 90 tcccaaaataactgtctcaactttatactagatctagtataaatttatactaagcttaag 31
Query: 114 acacttattttgagacgaagggagta 139
||| |||||||| |||| ||||||||
Sbjct: 30 acagttattttgggacggagggagta 5
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 56.0 bits (28), Expect = 2e-07
Identities = 70/84 (83%)
Strand = Plus / Minus
Query: 57 caaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgagaca 116
|||||||||| ||| | |||| |||| || |||| |||||||||||||| |||||| |
Sbjct: 87 caaaataagtatctcagctttacactagctctagtataaagttgtactaagtttgagaaa 28
Query: 117 cttattttgagacgaagggagtac 140
|||||||| |||| |||||||||
Sbjct: 27 gttattttgggacggagggagtac 4
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 110 tgagacacttattttgagacgaagggagta 139
||||| ||||||||||||||| ||||||||
Sbjct: 72 tgagatacttattttgagacggagggagta 101
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 54.0 bits (27), Expect = 7e-07
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 87 ttagtgcaaagttgtactaagcttgagacacttattttgagacgaagggag 137
||||| ||||||| |||||| ||||||||||||||||| |||| ||||||
Sbjct: 57 ttagtacaaagttatactaaagttgagacacttattttgggacggagggag 7
Score = 44.1 bits (22), Expect = 7e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 98 ttgtactaagcttgagacacttattttgagacgaagggagta 139
|||||||||| ||||||||||||||||| |||| ||| ||||
Sbjct: 49 ttgtactaag-ttgagacacttattttgggacggaggaagta 89
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 54.0 bits (27), Expect = 7e-07
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 42 atactcctttcatcccaaaataagtgtcttaactttgtactaactttagtgcaaagttg 100
||||||| | ||| |||||||| || || |||||||||||||||||||| ||||||||
Sbjct: 91 atactccctccattccaaaatagatgactcaactttgtactaactttagtacaaagttg 33
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 54.0 bits (27), Expect = 7e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttagtgcaaagttg 100
||||||| |||||| || |||||| ||||||||||||| ||||||||
Sbjct: 79 tcccaaattaagtgactcaactttatactaactttagtacaaagttg 33
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 54 tcccaaaataagtgtcttaactttgtactaa 84
|||||||||||||| || |||||||||||||
Sbjct: 16 tcccaaaataagtgactcaactttgtactaa 46
>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
Length = 101
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 54 tcccaaaataagtgtcttaactttgtactaactt 87
|||||||||||||| || ||||||||||||||||
Sbjct: 86 tcccaaaataagtgactcaactttgtactaactt 53
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttag 90
||||||| |||||| || |||||||||||||||||||
Sbjct: 16 tcccaaagtaagtgactcaactttgtactaactttag 52
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 52.0 bits (26), Expect = 3e-06
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 54 tcccaaaataagtgtcttaactttgtactaactttagtgcaaagttgtactaagcttgag 113
||||||||||| ||||| |||||| ||||| | || | ||| || |||||||||| ||
Sbjct: 90 tcccaaaataactgtctcaactttatactagatctaatataaatttatactaagcttaag 31
Query: 114 acacttattttgagacgaagggagta 139
||| |||||||| |||| ||||||||
Sbjct: 30 acagttattttgggacggagggagta 5
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 72 aactttgtactaactttagtgcaaagttg 100
|||||||||||||||||||| ||||||||
Sbjct: 61 aactttgtactaactttagtacaaagttg 33
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 72 aactttgtactaactttagtgcaaagttg 100
||||||||||||||||||||| |||||||
Sbjct: 34 aactttgtactaactttagtgtaaagttg 62
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 109 ttgagacacttattttgagacgaagggagta 139
||||||||| |||||||||||| ||||||||
Sbjct: 35 ttgagacacctattttgagacggagggagta 5
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 109 ttgagacacttattttgagacgaagggagtacct 142
||||| ||||||||||| |||| |||||||||||
Sbjct: 81 ttgagtcacttattttgggacggagggagtacct 114
