miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00239;mir-124;BX511178.6/169756-169675 7955:Danio rerio
(zebrafish)
Length = 82
Score = 147 bits (74), Expect = 3e-35
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 11 ctgcttttcttcgtgttcacagcggaccttgatttaaatttccatacaattaaggcacgc 70
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ctgcttttcttcgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgc 60
Query: 71 ggtgaatgccaagaaagatggc 92
|||||||||||||| |||||||
Sbjct: 61 ggtgaatgccaagagagatggc 82
>RF00239;mir-124;BAAF04105842.1/7834-7753 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 119 bits (60), Expect = 7e-27
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 21 tcgtgttcacagcggaccttgatttaaatttccatacaattaaggcacgcggtgaatgcc 80
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 11 tcgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcc 70
Query: 81 aaga 84
||||
Sbjct: 71 aaga 74
>RF00239;mir-124;AAWZ01025406.1/2960-3041 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 111 bits (56), Expect = 2e-24
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 22 cgtgttcacagcggaccttgatttaaatttccatacaattaaggcacgcggtgaatgcca 81
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 12 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcta 71
Query: 82 agaa 85
||||
Sbjct: 72 agaa 75
>RF00239;mir-124;BX324109.8/64997-64917 7955:Danio rerio
(zebrafish)
Length = 81
Score = 93.7 bits (47), Expect = 4e-19
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 22 cgtgttcacagcggaccttgatttaaatttccatacaattaaggcacgcggtgaatgcca 81
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacggcggaccttgatttaa-tatccatacaattaaggcacgcggtgaatgcca 70
Query: 82 aga 84
|||
Sbjct: 71 aga 73
>RF00239;mir-124;AANH01003936.1/69725-69645 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 93.7 bits (47), Expect = 4e-19
Identities = 63/67 (94%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 18 tcttcgtgttcacagcggaccttgatttaaatttccatacaattaaggcacgcggtgaat 77
|||| |||||||||| |||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 8 tctttgtgttcacagtggaccttgatttaa-tttcaatacaattaaggcacgcggtgaat 66
Query: 78 gccaaga 84
|||||||
Sbjct: 67 gccaaga 73
>RF00239;mir-124;AAIY01443585.1/551-630 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 59/63 (93%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 22 cgtgttcacagcggaccttgatttaaatttccatacaattaaggcacgcggtgaatgcca 81
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaatgt--catacaattaaggcacgcggtgaatgcca 69
Query: 82 aga 84
|||
Sbjct: 70 aga 72
>RF00239;mir-124;AAWZ01017180.1/15233-15154 28377:Anolis
carolinensis (green anole)
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 59/63 (93%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 22 cgtgttcacagcggaccttgatttaaatttccatacaattaaggcacgcggtgaatgcca 81
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaatgt--catacaattaaggcacgcggtgaatgcca 69
Query: 82 aga 84
|||
Sbjct: 70 aga 72
>RF00239;mir-124;AAVX01582238.1/229-149 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 85.7 bits (43), Expect = 1e-16
Identities = 59/63 (93%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 22 cgtgttcacagcggaccttgatttaaatttccatacaattaaggcacgcggtgaatgcca 81
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaatgttt-atacaattaaggcacgcggtgaatgcca 70
Query: 82 aga 84
|||
Sbjct: 71 aga 73
>RF00239;mir-124;BAAF04060426.1/3450-3529 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 79.8 bits (40), Expect = 6e-15
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 22 cgtgttcacagcggaccttgatttaaatttccatacaattaaggcacgcggtgaatgcca 81
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaatgt--cttacaattaaggcacgcggtgaatgcca 69
Query: 82 aga 84
|||
Sbjct: 70 aga 72
>RF00239;mir-124;ABGA01235197.1/1392-1331 9601:Pongo abelii
(Sumatran orangutan)
Length = 62
Score = 73.8 bits (37), Expect = 4e-13
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 22 cgtgttcacagcggaccttgatttaaatttccatacaattaaggcacgcggtgaatgcca 81
|||||||||||||| | |||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 3 cgtgttcacagcgggacctgatttaaatgtccatacaa-taaggcacgcggtgaatgcca 61
Query: 82 a 82
|
Sbjct: 62 a 62
>RF00239;mir-124;AANH01002585.1/13981-13901 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 71.9 bits (36), Expect = 1e-12
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 21 tcgtgttcacagcggaccttgatttaaatttccatacaattaaggcacgcggtgaatgcc 80
|||||||||| ||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 11 tcgtgttcacggcggaccttgatttat-tagcaatacaattaaggcacgcggtgaatgcc 69
Query: 81 aaga 84
||||
Sbjct: 70 aaga 73
>RF00239;mir-124;AAWZ01041803.1/11566-11646 28377:Anolis
carolinensis (green anole)
Length = 81
Score = 67.9 bits (34), Expect = 2e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 19 cttcgtgttcacagcggaccttgatttaaatttccatacaattaaggcacgcggtgaatg 78
|||||||||||||| |||||||||||| | | | | |||||||||||||||||||||||
Sbjct: 9 cttcgtgttcacagtggaccttgatttca-tgtggacacaattaaggcacgcggtgaatg 67
Query: 79 ccaaga 84
||||||
Sbjct: 68 ccaaga 73
>RF00239;mir-124;BAAE01194669.1/2121-2201 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 56 acaattaaggcacgcggtgaatgccaaga 84
|||||||||||||||||||||||||||||
Sbjct: 45 acaattaaggcacgcggtgaatgccaaga 73
>RF00239;mir-124;ABEP02005892.1/41262-41341 7739:Branchiostoma
floridae (Florida lancelet)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 57 caattaaggcacgcggtgaatgccaagaa 85
|||||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaagaa 73
>RF00239;mir-124;AAGJ02120869.1/14315-14397
7668:Strongylocentrotus purpuratus
Length = 83
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 56 acaattaaggcacgcggtgaatgccaag 83
||||||||||||||||||||||||||||
Sbjct: 46 acaattaaggcacgcggtgaatgccaag 73
>RF00239;mir-124;BAAF04094312.1/9605-9526 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 57 caattaaggcacgcggtgaatgccaaga 84
||||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaaga 72
>RF00239;mir-124;AC189672.3/51235-51156 6334:Trichinella spiralis
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 aattaaggcacgcggtgaatgccaag 83
||||||||||||||||||||||||||
Sbjct: 46 aattaaggcacgcggtgaatgccaag 71
>RF00239;mir-124;BX248497.11/64645-64566 7955:Danio rerio
(zebrafish)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 caattaaggcacgcggtgaatgccaa 82
||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaa 70
>RF00239;mir-124;ABKE01011138.1/1481-1398 54126:Pristionchus
pacificus
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 taaggcacgcggtgaatgccaaga 84
||||||||||||||||||||||||
Sbjct: 53 taaggcacgcggtgaatgccaaga 76
>RF00239;mir-124;AAZO01006175.1/169136-169059 121224:Pediculus
humanus corporis (human body louse)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 taaggcacgcggtgaatgccaaga 84
||||||||||||||||||||||||
Sbjct: 47 taaggcacgcggtgaatgccaaga 70
>RF00239;mir-124;ABLF01025804.1/1243-1161 7029:Acyrthosiphon pisum
(pea aphid)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 taaggcacgcggtgaatgccaaga 84
||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaaga 75
>RF00239;mir-124;AADK01010415.1/6990-7072 7091:Bombyx mori
(domestic silkworm)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 taaggcacgcggtgaatgccaaga 84
||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaaga 75
>RF00239;mir-124;AADG05004246.1/190424-190509 7460:Apis mellifera
(honey bee)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 taaggcacgcggtgaatgccaaga 84
||||||||||||||||||||||||
Sbjct: 55 taaggcacgcggtgaatgccaaga 78
>RF00239;mir-124;AAWU01000987.1/43993-44075 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 taaggcacgcggtgaatgccaaga 84
||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaaga 75
>RF00239;mir-124;AAGE02000531.1/21424-21342 7159:Aedes aegypti
(yellow fever mosquito)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 taaggcacgcggtgaatgccaaga 84
||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaaga 75
>RF00239;mir-124;AAPT01021775.1/703690-703766 7222:Drosophila
grimshawi
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 taaggcacgcggtgaatgccaaga 84
||||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaaga 69
>RF00239;mir-124;AANI01016269.1/7414-7490 7244:Drosophila virilis
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 taaggcacgcggtgaatgccaaga 84
||||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaaga 69
>RF00239;mir-124;AAJJ01000069.1/11639-11717 7070:Tribolium
castaneum (red flour beetle)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 taaggcacgcggtgaatgccaaga 84
||||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaaga 71
>RF00239;mir-124;ABJB010184237.1/16835-16915 6945:Ixodes
scapularis (black-legged tick)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 taaggcacgcggtgaatgccaaga 84
||||||||||||||||||||||||
Sbjct: 50 taaggcacgcggtgaatgccaaga 73
>RF00239;mir-124;AAWT01083931.1/8247-8331 79327:Schmidtea
mediterranea
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 ttaaggcacgcggtgaatgcca 81
||||||||||||||||||||||
Sbjct: 53 ttaaggcacgcggtgaatgcca 74
>RF00239;mir-124;ABLA01036893.1/860-781 51029:Heterodera glycines
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 taaggcacgcggtgaatgccaa 82
||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaa 70
>RF00239;mir-124;AACT01007791.1/10034-10112 51511:Ciona savignyi
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 taaggcacgcggtgaatgccaa 82
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AACT01004897.1/11101-11179 51511:Ciona savignyi
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 taaggcacgcggtgaatgccaa 82
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AABS01000310.1/18792-18714 7719:Ciona
intestinalis
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 taaggcacgcggtgaatgccaa 82
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AABS01000310.1/18932-18854 7719:Ciona
intestinalis
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 taaggcacgcggtgaatgccaa 82
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
