miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAE01218263.1/598-683 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 137 bits (69), Expect = 3e-32
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 5 acagggtgaggtagtaggttgtgtggtttcagggttgtaattttgccccatcaggagata 64
|||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||
Sbjct: 1 acagggtgaggtagtaggttgtgtggtttcagggttgtgattttaccccataaggagcta 60
Query: 65 actatacaacctactgccttccctg 89
|||||||||||||||||||||||||
Sbjct: 61 actatacaacctactgccttccctg 85
>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 125 bits (63), Expect = 1e-28
Identities = 76/79 (96%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 9 ggtgaggtagtaggttgtgtggtttcagggttgtaattttgcccc-atcaggagataact 67
||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtgtggtttcagggtagtcattttgccccaatcaggagataact 64
Query: 68 atacaacctactgccttcc 86
|||||||||||||||||||
Sbjct: 65 atacaacctactgccttcc 83
>RF00027;let-7;AANH01001398.1/49056-49141 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 123 bits (62), Expect = 4e-28
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 5 acagggtgaggtagtaggttgtgtggtttcagggttgtaattttgccccatcaggagata 64
|||||||||||||||||||||||||||||| |||| || ||||||||| ||||| |||||
Sbjct: 1 acagggtgaggtagtaggttgtgtggtttcggggtagtgattttgcccgatcagaagata 60
Query: 65 actatacaacctactgccttccctga 90
|||||||||| |||||||||||||||
Sbjct: 61 actatacaacatactgccttccctga 86
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 123 bits (62), Expect = 4e-28
Identities = 78/82 (95%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 10 gtgaggtagtaggttgtgtggtttcagggttgtaatttt-gccccatcaggagataacta 68
||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtgtagtttcagggtagtgatttttgccccatcaggagataacta 65
Query: 69 tacaacctactgccttccctga 90
||||||||||||||||||||||
Sbjct: 66 tacaacctactgccttccctga 87
>RF00027;let-7;AAPN01341034.1/3404-3318 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 103 bits (52), Expect = 4e-22
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtgtggtttcagggttgtaattttgcccc-atcaggagataactat 69
|||||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||
Sbjct: 7 tgaggtagtaggttgtgtggtttcaggggagtgattttgccccaatcagaagataactat 66
Query: 70 acaacctactgccttccctg 89
||| ||||||||||||||||
Sbjct: 67 acagcctactgccttccctg 86
>RF00027;let-7;AAQR01020418.1/249-164 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 95.6 bits (48), Expect = 1e-19
Identities = 77/84 (91%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggtttcagggtt-gtaattttgccccatcaggagataac 66
||||||||||||||||||||||||||||||| || || ||||||| |||| |||||||
Sbjct: 4 gggtgaggtagtaggttgtgtggtttcaggggcagtgatgttgcccc-tcagaagataac 62
Query: 67 tatacaacctactgccttccctga 90
||||||||||||||||||||||||
Sbjct: 63 tatacaacctactgccttccctga 86
>RF00027;let-7;AAGW01230269.1/1770-1854 9986:Oryctolagus cuniculus
(rabbit)
Length = 85
Score = 71.9 bits (36), Expect = 1e-12
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggtttcagggttgtaattttgccccatcaggagataact 67
||||||||||||||||||||||||||||||| | | | ||||| |||| ||||||||
Sbjct: 4 gggtgaggtagtaggttgtgtggtttcagggcagcggtgtcgcccc-tcagcagataact 62
Query: 68 atacaacctactgccttccc 87
||||| ||||||||||||||
Sbjct: 63 atacagcctactgccttccc 82
>RF00027;let-7;AAPY01023439.1/425-342 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 67/77 (87%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtgtggtttcagggttgtaattttgccccatcaggagataact 67
||||||||||||||||| ||||||||||||| || || ||||||| |||| | ||||||
Sbjct: 4 gggtgaggtagtaggtt-tgtggtttcagggcagtgatgttgcccc-tcagcaaataact 61
Query: 68 atacaacctactgcctt 84
| |||||||||| ||||
Sbjct: 62 acacaacctacttcctt 78
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 55 tcaggagataactatacaacctactgccttccctga 90
||||||||||||||||||| ||| ||||||||||||
Sbjct: 52 tcaggagataactatacaatctattgccttccctga 87
>RF00027;let-7;CAAB01000053.1/115251-115164 31033:Takifugu
rubripes
Length = 88
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 55 tcaggagataactatacaacctactgccttcc 86
|||||||||||||||||||| |||||||||||
Sbjct: 53 tcaggagataactatacaacttactgccttcc 84
>RF00027;let-7;BAAF04002393.1/17587-17677 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 55 tcaggagataactatacaacctactgccttcc 86
|||||||||||||||||||| |||||||||||
Sbjct: 56 tcaggagataactatacaacttactgccttcc 87
>RF00027;let-7;AAVX01008163.1/128-212 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 44 attttgccccatcaggagataactatacaacctactgccttccctg 89
||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct: 40 attttgccccaa-aggagataactatacaacctgctgcctttcctg 84
>RF00027;let-7;AAPN01191849.1/6200-6287 9258:Ornithorhynchus
anatinus (platypus)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 58 ggagataactatacaacctactgccttccctga 90
|||||||||||||||| ||| ||||||||||||
Sbjct: 56 ggagataactatacaatctattgccttccctga 88
>RF00027;let-7;AANH01006181.1/186306-186220 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 60 agataactatacaacctactgccttccctga 90
|||||||||||||| ||| ||||||||||||
Sbjct: 57 agataactatacaatctattgccttccctga 87
>RF00027;let-7;AAGU02300353.1/1892-1804 9785:Loxodonta africana
(African savanna elephant)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 60 agataactatacaacctactgccttccctg 89
|||||||||||||||||||| | |||||||
Sbjct: 59 agataactatacaacctactactttccctg 88
>RF00027;let-7;ABRQ01114151.1/10843-10755 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 60 agataactatacaacctactgccttccctg 89
|||||||||||||||||||| | |||||||
Sbjct: 59 agataactatacaacctactactttccctg 88
>RF00027;let-7;BX664745.13/143600-143510 7955:Danio rerio
(zebrafish)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 57 aggagataactatacaacctactgccttcc 86
||||||||||||||||| |||||||||||
Sbjct: 58 aggagataactatacaatttactgccttcc 87
