miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;AAVX01020289.1/2798-2712 7868:Callorhinchus milii
          (ghost shark)
          Length = 87

 Score =  107 bits (54), Expect = 3e-23
 Identities = 69/74 (93%)
 Strand = Plus / Plus

                                                                      
Query: 11 gctttgctaaagctggtaaaaaggaaccaaatcacctcttggatggatttggtccccttc 70
          ||||||||||||||||||||| |||||||||||| || ||  ||||||||||||||||||
Sbjct: 4  gctttgctaaagctggtaaaatggaaccaaatcaactattctatggatttggtccccttc 63

                        
Query: 71 aaccagctgtagct 84
          ||||||||||||||
Sbjct: 64 aaccagctgtagct 77




>RF00446;mir-133;AAIY01559715.1/853-939 9371:Echinops telfairi
          (small Madagascar hedgehog)
          Length = 87

 Score = 75.8 bits (38), Expect = 9e-14
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                      
Query: 11 gctttgctaaagctggtaaaaaggaaccaaatcacctcttggatggatttggtccccttc 70
          ||||||||| ||||||||||| ||||||| |||  |  |  |||||||||||||||||||
Sbjct: 4  gctttgctagagctggtaaaatggaaccagatcggccgtatgatggatttggtccccttc 63

                        
Query: 71 aaccagctgtagct 84
          ||||||||||||||
Sbjct: 64 aaccagctgtagct 77




>RF00446;mir-133;AAQQ01431588.1/1752-1838 43179:Spermophilus
          tridecemlineatus (thirteen-lined ground squirrel)
          Length = 87

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                      
Query: 11 gctttgctaaagctggtaaaaaggaaccaaatcacctcttggatggatttggtccccttc 70
          |||||||| |||||||| ||| |||||||||||  ||  |   |||||||||||||||||
Sbjct: 4  gctttgctgaagctggtcaaatggaaccaaatcggctgctcactggatttggtccccttc 63

                        
Query: 71 aaccagctgtagct 84
          ||||||||||||||
Sbjct: 64 aaccagctgtagct 77




>RF00446;mir-133;AAVX01266048.1/613-699 7868:Callorhinchus milii
          (ghost shark)
          Length = 87

 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 55 ggatttggtccccttcaaccagctgtagct 84
          ||||||||||||||||||||||||||||||
Sbjct: 48 ggatttggtccccttcaaccagctgtagct 77




>RF00446;mir-133;AAWZ01040028.1/1304-1218 28377:Anolis
          carolinensis (green anole)
          Length = 87

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 54 tggatttggtccccttcaaccagctgt 80
          |||||||||||||||||||||||||||
Sbjct: 47 tggatttggtccccttcaaccagctgt 73




>RF00446;mir-133;ABLF01021874.1/5675-5746 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 72

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 57 atttggtccccttcaaccagctgtagc 83
          |||||||||||||||||||||||||||
Sbjct: 35 atttggtccccttcaaccagctgtagc 61




>RF00446;mir-133;AAGE02024522.1/50344-50238 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 107

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 57 atttggtccccttcaaccagctgtagc 83
          |||||||||||||||||||||||||||
Sbjct: 70 atttggtccccttcaaccagctgtagc 96




>RF00446;mir-133;ABKQ02016003.1/5336-5232 377270:Anopheles gambiae
          S
          Length = 105

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 57 atttggtccccttcaaccagctgtagc 83
          |||||||||||||||||||||||||||
Sbjct: 68 atttggtccccttcaaccagctgtagc 94




>RF00446;mir-133;AAPP01015693.1/86515-86606 7217:Drosophila
          ananassae
          Length = 92

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 57 atttggtccccttcaaccagctgtagc 83
          |||||||||||||||||||||||||||
Sbjct: 55 atttggtccccttcaaccagctgtagc 81




>RF00446;mir-133;AAQB01006401.1/332784-332872 7260:Drosophila
          willistoni
          Length = 89

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 57 atttggtccccttcaaccagctgtagc 83
          |||||||||||||||||||||||||||
Sbjct: 52 atttggtccccttcaaccagctgtagc 78




>RF00446;mir-133;AASW01052175.1/117-202 7240:Drosophila simulans
          Length = 86

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 57 atttggtccccttcaaccagctgtagc 83
          |||||||||||||||||||||||||||
Sbjct: 49 atttggtccccttcaaccagctgtagc 75




>RF00446;mir-133;AAPT01020977.1/40333-40419 7222:Drosophila
          grimshawi
          Length = 87

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 57 atttggtccccttcaaccagctgtagc 83
          |||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtagc 76




>RF00446;mir-133;AAPU01010689.1/170290-170375 7230:Drosophila
          mojavensis
          Length = 86

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 57 atttggtccccttcaaccagctgtagc 83
          |||||||||||||||||||||||||||
Sbjct: 49 atttggtccccttcaaccagctgtagc 75




>RF00446;mir-133;AADN02043827.1/38919-38834 9031:Gallus gallus
          (chicken)
          Length = 86

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 54 tggatttggtccccttcaaccagctg 79
          ||||||||||||||||||||||||||
Sbjct: 46 tggatttggtccccttcaaccagctg 71




>RF00446;mir-133;CAAE01007044.1/175-261 99883:Tetraodon
          nigroviridis
          Length = 87

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                      
Query: 11 gctttgctaaagctggtaaaaaggaaccaaatcacctcttggatggatttggtccccttc 70
          ||||||||  ||||||| ||| ||||||| ||| |||  ||  |||||||||||||||||
Sbjct: 4  gctttgctgcagctggtcaaatggaaccagatctccttctgtctggatttggtccccttc 63

                
Query: 71 aaccag 76
          ||||||
Sbjct: 64 aaccag 69




>RF00446;mir-133;AAZO01007144.1/88847-88936 121224:Pediculus
          humanus corporis (human body louse)
          Length = 90

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 57 atttggtccccttcaaccagctgtag 82
          ||||||||||||||||||||||||||
Sbjct: 53 atttggtccccttcaaccagctgtag 78




>RF00446;mir-133;BABH01010529.1/47109-47021 7091:Bombyx mori
          (domestic silkworm)
          Length = 89

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 57 atttggtccccttcaaccagctgtag 82
          ||||||||||||||||||||||||||
Sbjct: 52 atttggtccccttcaaccagctgtag 77




>RF00446;mir-133;AADG05005567.1/35761-35851 7460:Apis mellifera
          (honey bee)
          Length = 91

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 57 atttggtccccttcaaccagctgtag 82
          ||||||||||||||||||||||||||
Sbjct: 54 atttggtccccttcaaccagctgtag 79




>RF00446;mir-133;AAGJ02035428.1/18887-18799
          7668:Strongylocentrotus purpuratus
          Length = 89

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 55 ggatttggtccccttcaaccagctgtagc 83
          ||||||||||||||||||||||| |||||
Sbjct: 50 ggatttggtccccttcaaccagccgtagc 78




>RF00446;mir-133;AAFS01007554.1/884-971 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 88

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 atttggtccccttcaaccagctgta 81
          |||||||||||||||||||||||||
Sbjct: 51 atttggtccccttcaaccagctgta 75




>RF00446;mir-133;AAWU01037751.1/37190-37294 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 105

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 57 atttggtccccttcaaccagctgt 80
          ||||||||||||||||||||||||
Sbjct: 71 atttggtccccttcaaccagctgt 94




>RF00446;mir-133;AAJJ01000046.1/77209-77292 7070:Tribolium
          castaneum (red flour beetle)
          Length = 84

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 57 atttggtccccttcaaccagctgt 80
          ||||||||||||||||||||||||
Sbjct: 47 atttggtccccttcaaccagctgt 70




>RF00446;mir-133;ABJB010482881.1/10984-10878 6945:Ixodes
          scapularis (black-legged tick)
          Length = 107

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 57 atttggtccccttcaaccagctgt 80
          ||||||||||||||||||||||||
Sbjct: 70 atttggtccccttcaaccagctgt 93




>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
          intestinalis
          Length = 92

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 58 tttggtccccttcaaccagctg 79
          ||||||||||||||||||||||
Sbjct: 56 tttggtccccttcaaccagctg 77




>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
          (chicken)
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 58 tttggtccccttcaaccagctgtagc 83
          ||||||||||||||||||||| ||||
Sbjct: 52 tttggtccccttcaaccagctatagc 77