miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00251;mir-219;BAAE01153842.1/2224-2151 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 17 ggagctgattgtccaaacgcaatttttgagtctgcctaatgctaatccaggagttgtgta 76
|||| ||||||||||||||||||| ||| |||| |||||| || |||||||||||| |
Sbjct: 1 ggagttgattgtccaaacgcaattcttgtgtct-actaatgtgaaaccaggagttgtgga 59
Query: 77 tggacatca 85
|||||||||
Sbjct: 60 tggacatca 68
>RF00251;mir-219;CR848045.10/89252-89178 7955:Danio rerio
(zebrafish)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatttttgagtctgcctaatgctaatccaggagttgtgtatgga 80
|||||||||||||||||||| ||| |||| ||| || | | ||||||||||| |||||
Sbjct: 5 ctgattgtccaaacgcaattcttgcgtcttcctgattattgtgcaggagttgtggatgga 64
Query: 81 catcat 86
||||||
Sbjct: 65 catcat 70
>RF00251;mir-219;BAAF04001368.1/1865-1938 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 50.1 bits (25), Expect = 6e-06
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 17 ggagctgattgtccaaacgcaatttttgagtctgcctaatgctaatccaggagttgtgta 76
|||| ||||||||||||||||||| ||| |||| ||||| || |||||||||||| |
Sbjct: 1 ggagttgattgtccaaacgcaattcttgtgtct-agtaatgtgaaaccaggagttgtgga 59
Query: 77 tggacatca 85
|||||||||
Sbjct: 60 tggacatca 68
>RF00251;mir-219;CAAB01001740.1/22605-22679 31033:Takifugu
rubripes
Length = 75
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 gctgattgtccaaacgcaatttttgag 46
||||||||||||||||||||| |||||
Sbjct: 4 gctgattgtccaaacgcaattcttgag 30
>RF00251;mir-219;BAAE01000431.1/3148-3074 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatttttgagt 47
|||||||||||||||||||| ||||||
Sbjct: 5 ctgattgtccaaacgcaattcttgagt 31
>RF00251;mir-219;AANH01001091.1/47038-46966 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 73
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 61 atccaggagttgtgtatggacatcat 86
|||||||||||||| |||||||||||
Sbjct: 43 atccaggagttgtggatggacatcat 68
>RF00251;mir-219;AANH01004623.1/138672-138748 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatttttgag 46
|||||||||||||||||||| |||||
Sbjct: 5 ctgattgtccaaacgcaattcttgag 30
>RF00251;mir-219;BAAE01251032.1/4888-4958 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 61 atccaggagttgtgtatggacatcat 86
|||||||||||||| |||||||||||
Sbjct: 41 atccaggagttgtggatggacatcat 66
