miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00701;mir-126;EU221177.1/65651-65724 8030:Salmo salar (Atlantic
salmon)
Length = 74
Score = 135 bits (68), Expect = 9e-32
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 7 acggtccattattacttttggtacgcgctaggccagtctcaaactcgtaccgtgagtaat 66
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 acggttcattattacttttggtacgcgctaggccagtctcaaactcgtaccgtgagtaat 62
Query: 67 aatgcactgtgg 78
||||||||||||
Sbjct: 63 aatgcactgtgg 74
>RF00701;mir-126;BAAE01255215.1/350-278 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 103 bits (52), Expect = 3e-22
Identities = 65/68 (95%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 8 cggtccattattacttttggtacgcgctaggccagtctcaaactcgtaccgtgagtaata 67
||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||
Sbjct: 4 cggtccattattacttttggtacgcgctatgccactctc-aactcgtaccgtgagtaata 62
Query: 68 atgcactg 75
||||||||
Sbjct: 63 atgcactg 70
>RF00701;mir-126;AAWZ01045019.1/473-401 28377:Anolis carolinensis
(green anole)
Length = 73
Score = 87.7 bits (44), Expect = 2e-17
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 8 cggtccattattacttttggtacgcgctaggccagtctcaaactcgtaccgtgagtaata 67
|||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||
Sbjct: 4 cggtccattattacttttggtacgcgctgtgccact-tcaaactcgtaccgtgagtaata 62
Query: 68 atgc 71
||||
Sbjct: 63 atgc 66
>RF00701;mir-126;AAVX01058805.1/2145-2073 7868:Callorhinchus milii
(ghost shark)
Length = 73
Score = 77.8 bits (39), Expect = 2e-14
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 12 ccattattacttttggtacgcgctaggccagtctcaaactcgtaccgtgagtaataatgc 71
|||||||||||||||||||||||| | || | |||||||||||||||||||||||||||
Sbjct: 8 ccattattacttttggtacgcgctgtgacact-tcaaactcgtaccgtgagtaataatgc 66
Query: 72 actgtgg 78
|| ||||
Sbjct: 67 acagtgg 73
>RF00701;mir-126;AAPN01325297.1/2349-2421 9258:Ornithorhynchus
anatinus (platypus)
Length = 73
Score = 63.9 bits (32), Expect = 3e-10
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 12 ccattattacttttggtacgcgctaggccagtctcaaactcgtaccgtgagtaataatgc 71
|||||||||||||||||||||||| | | | |||||||||||||||||||||||||||
Sbjct: 8 ccattattacttttggtacgcgctgtgacgct-tcaaactcgtaccgtgagtaataatgc 66
>RF00701;mir-126;AAFR03005634.1/12031-12103 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 61.9 bits (31), Expect = 1e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 13 cattattacttttggtacgcgctaggccagtctcaaactcgtaccgtgagtaataatgc 71
||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacaca-tcaaactcgtaccgtgagtaataatgc 66
>RF00701;mir-126;ABRQ01610658.1/2102-2030 9813:Procavia capensis
(cape rock hyrax)
Length = 73
Score = 61.9 bits (31), Expect = 1e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 13 cattattacttttggtacgcgctaggccagtctcaaactcgtaccgtgagtaataatgc 71
||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacg-tcaaactcgtaccgtgagtaataatgc 66
>RF00701;mir-126;AAQR01724391.1/772-699 30611:Otolemur garnettii
(small-eared galago)
Length = 74
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 cattattacttttggtacgcgct 35
|||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgct 31
