miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 101 bits (51), Expect = 2e-21
Identities = 79/87 (90%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
|||||||| |||||||||||||| ||| ||||||||| | ||||||||| |||||| |||
Sbjct: 6 actccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgctc 65
Query: 66 ttatattagtttacggagggagtatta 92
||||||||||||| |||||||||||||
Sbjct: 66 ttatattagtttatggagggagtatta 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 64 tcttatattagtttacggagggagta 89
||||||||||||||||||||||||||
Sbjct: 30 tcttatattagtttacggagggagta 5
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 95.6 bits (48), Expect = 9e-20
Identities = 76/84 (90%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaa-tctc 65
||||||||||||||||||||||||||| ||||||| | ||||||||| ||||| |||
Sbjct: 88 actccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacactc 29
Query: 66 ttatattagtttacggagggagta 89
||||||||||||||||||||||||
Sbjct: 28 ttatattagtttacggagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
|||||||| |||||||||||||| | |||||||||| || ||||| |||||| |
Sbjct: 6 actccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgttt 65
Query: 66 ttatattagtttacggagggagta 89
|||||||||||||| |||||||||
Sbjct: 66 ttatattagtttacagagggagta 89
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 95.6 bits (48), Expect = 9e-20
Identities = 76/84 (90%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
||||||||||||||||||||||| | ||||||||||| ||||||||||| |||||| ||
Sbjct: 6 actccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgctt 65
Query: 66 ttatattagtttacggagggagta 89
|||||||||||||| | |||||||
Sbjct: 66 ttatattagtttacagggggagta 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 63 ctcttatattagtttacggagggagta 89
||||||||||||||||| |||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttaga 40
|||||| |||||||||||||||||| | ||||||
Sbjct: 88 actccccctgtaaactaatataaaagcatttaga 55
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 81.8 bits (41), Expect = 1e-15
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
||||||||||||||||||||||| | ||||||||| |||| |||||| |||||| |||
Sbjct: 6 actccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgctc 65
Query: 66 ttatattagtttacggaggga 86
||||||||||||||| |||||
Sbjct: 66 ttatattagtttacgaaggga 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 63 ctcttatattagtttacggagggagta 89
||||||||||||||||| |||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 79.8 bits (40), Expect = 6e-15
Identities = 72/80 (90%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 11 cctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctcttat 69
||||||||||||||||||||| | ||||||| | ||| |||||| |||||| |||||||
Sbjct: 9 cctctgtaaactaatataaaagcatttagatcactaa-gtagtgatctaaatgctcttat 67
Query: 70 attagtttacggagggagta 89
||||||||||||||||||||
Sbjct: 68 attagtttacggagggagta 87
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 77.8 bits (39), Expect = 2e-14
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaatctct 66
||||||||||||||||||||||||| |||||||| | |||| |||| || || ||||
Sbjct: 6 actccctctgtaaactaatataaaagtgtttagataactaaaatagt-tctaaacgctct 64
Query: 67 tatattagtttacggagggagta 89
|||||||||||||||||||||||
Sbjct: 65 tatattagtttacggagggagta 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttaga 40
|||||||| |||||||||||||| | ||||||||
Sbjct: 86 actccctccgtaaactaatataagagcgtttaga 53
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaa-atctc 65
||||||||||||||||||||||| | || |||||| | |||||||||| |||| |||
Sbjct: 88 actccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgctc 29
Query: 66 ttatattagtttacggagggagtatt 91
|||||||||||||| |||||||||||
Sbjct: 28 ttatattagtttacagagggagtatt 3
Score = 48.1 bits (24), Expect = 2e-05
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaa-atctc 65
||||||||||||||||||||||| | || |||||| | || ||||| |||| |||
Sbjct: 6 actccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgctc 65
Query: 66 ttatattagtttacggagggagta 89
|||||||||||||| |||||||||
Sbjct: 66 ttatattagtttacagagggagta 89
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
|||||||| ||||||||||||| | | |||||||||||||| ||||| |||||| ||
Sbjct: 88 actccctccataaactaatataagagcatttagattattaaaatagtgatctaaatgctt 29
Query: 66 ttatattagtttacggagggagtatt 91
|||||||||||||| |||||||||||
Sbjct: 28 ttatattagtttacagagggagtatt 3
Score = 56.0 bits (28), Expect = 8e-08
Identities = 71/84 (84%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
||||||||||||||||||||||||| | ||||||| | || || | |||||| |||
Sbjct: 6 actccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgctc 65
Query: 66 ttatattagtttacggagggagta 89
||||||||||||| ||||||||||
Sbjct: 66 ttatattagtttatggagggagta 89
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 75.8 bits (38), Expect = 9e-14
Identities = 67/74 (90%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 17 taaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctcttatattagt 75
||||||||||||||| ||||||||| ||| |||||||| |||||| |||||||||||||
Sbjct: 16 taaactaatataaaagcgtttagatcatt-aagtagtgatctaaatgctcttatattagt 74
Query: 76 ttacggagggagta 89
|||| |||||||||
Sbjct: 75 ttacagagggagta 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataa 29
|||||||||||||||||||||||
Sbjct: 87 actccctctgtaaactaatataa 65
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 73.8 bits (37), Expect = 3e-13
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaa-tctctt 67
||||| ||||||||||||||| | |||| |||| |||||| | ||| ||||| ||||||
Sbjct: 8 tccctttgtaaactaatataagagcgttgagatcattaaaattgtgatctaaactctctt 67
Query: 68 atattagtttacggagggagt 88
|||||||||||||||||||||
Sbjct: 68 atattagtttacggagggagt 88
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
|||||||| |||||||||||||| | | |||| || |||||| ||||| ||||| |||
Sbjct: 88 actccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacactc 29
Query: 66 ttatattagtttacggagggagta 89
||||||||||||||||||||||||
Sbjct: 28 ttatattagtttacggagggagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 ctcttatattagtttacggagggagta 89
||||||||||||||||| |||||||||
Sbjct: 63 ctcttatattagtttaccgagggagta 89
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaa-tctc 65
||||||||||||||||||||||| ||||||||||| | || |||| | ||||| ||
Sbjct: 88 actccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgctt 29
Query: 66 ttatattagtttacggagggagta 89
||||||||||||||||||||||||
Sbjct: 28 ttatattagtttacggagggagta 5
Score = 71.9 bits (36), Expect = 1e-12
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaa-tctc 65
|||||||| |||||||||||||||| |||||||| || |||| ||||| ||||| ||
Sbjct: 6 actccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgttc 65
Query: 66 ttatattagtttacggagggagta 89
|||||||||||||| |||||||||
Sbjct: 66 ttatattagtttacagagggagta 89
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaa-tctc 65
||||||||||||||||||||||||| |||| |||| |||| ||||| ||||| |||
Sbjct: 88 actccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacactc 29
Query: 66 ttatattagtttacggagggagta 89
|||||||||||||| |||||||||
Sbjct: 28 ttatattagtttacagagggagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataa 29
|||||||||||||||||||||||
Sbjct: 6 actccctctgtaaactaatataa 28
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
||||||||| ||||| ||||||| | |||||||| | |||| |||||| ||||| |||
Sbjct: 6 actccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgctc 65
Query: 66 ttatattagtttacggagggagta 89
||||||||||||||||||||||||
Sbjct: 66 ttatattagtttacggagggagta 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttaga 40
|||||||| |||||||||||||| | ||||||||
Sbjct: 88 actccctccgtaaactaatataagagcgtttaga 55
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
|||||||| |||||||||||||| | ||||||||||| || ||||| |||||| |||
Sbjct: 88 actccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgctc 29
Query: 66 ttatattagtttacggagggagta 89
|||||||||||||| |||||||||
Sbjct: 28 ttatattagtttacagagggagta 5
Score = 71.9 bits (36), Expect = 1e-12
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
||||||||||||||||||||||| | | ||||||| | |||| |||| ||||| |||
Sbjct: 6 actccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgctc 65
Query: 66 ttatattagtttacggagggagta 89
||||||||||||||||||||||||
Sbjct: 66 ttatattagtttacggagggagta 89
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
||||||||||||||||||||||||| | |||| |||| |||| || ||| ||||| |
Sbjct: 6 actccctctgtaaactaatataaaagcatttaaattactaaaataatgttttaaataatt 65
Query: 66 ttatattagtttacggagggagta 89
||||||||||||||||||||||||
Sbjct: 66 ttatattagtttacggagggagta 89
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaa-tctc 65
|||||||| |||||||||||||| | |||||||| || |||| ||||| ||||| |||
Sbjct: 88 actccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgctc 29
Query: 66 ttatattagtttacggagggagta 89
|||||||||||||| |||||||||
Sbjct: 28 ttatattagtttacagagggagta 5
Score = 71.9 bits (36), Expect = 1e-12
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaa-tctc 65
||||||||||||||||||||||| | ||||||||| | || |||| | ||||| |||
Sbjct: 6 actccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgctc 65
Query: 66 ttatattagtttacggagggagta 89
||||||||||||||||||||||||
Sbjct: 66 ttatattagtttacggagggagta 89
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 69.9 bits (35), Expect = 5e-12
Identities = 75/87 (86%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 4 agcactccctctgtaaactaatataaaaacgtttagattattaaagtagtg-tcctaaat 62
||||||||||| |||||||||||||| | ||||||||| | |||| ||||| || ||
Sbjct: 91 agcactccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaaca 32
Query: 63 ctcttatattagtttacggagggagta 89
||||||||||| |||||||||||||||
Sbjct: 31 ctcttatattaatttacggagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 ctcttatattagtttacggagggagt 88
||||||||||||||||| ||||||||
Sbjct: 63 ctcttatattagtttactgagggagt 88
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 69.9 bits (35), Expect = 5e-12
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaa-tctc 65
||||||||||||||||||||||| | ||||||||| | |||||||||| ||||| |||
Sbjct: 6 actccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgctc 65
Query: 66 ttatattagtt 76
|||||||||||
Sbjct: 66 ttatattagtt 76
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 63 ctcttatattagtttacggagggagtatt 91
||||||||||||||||| |||||||||||
Sbjct: 31 ctcttatattagtttacagagggagtatt 3
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaaacgtttagattattaaagtagtg-tcctaaatctctt 67
||||||||||||||||||||| | | ||||||| | |||||||||| || ||| ||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 67
Query: 68 atattagtttacggagggagta 89
|||||||||||| |||||||||
Sbjct: 68 atattagtttacagagggagta 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataa 29
|||||||||||||||||||||||
Sbjct: 88 actccctctgtaaactaatataa 66
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
|||||||| |||||||||||||| | ||||||| | | |||| ||||| |||||| |||
Sbjct: 6 actccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgctc 65
Query: 66 ttatattagtttacggagggagtatt 91
|||||||||||||| |||| ||||||
Sbjct: 66 ttatattagtttacagaggaagtatt 91
Score = 63.9 bits (32), Expect = 3e-10
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 11 cctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctcttat 69
||||||||||||||||||| | | ||||||| | || ||||| |||||| |||||||
Sbjct: 84 cctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgctcttat 25
Query: 70 attagtttacggagggagta 89
||||||||||||||||||||
Sbjct: 24 attagtttacggagggagta 5
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 65.9 bits (33), Expect = 8e-11
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
||||||| ||||||||||||||||| | ||||||| |||| |||| | ||||| |||
Sbjct: 88 actccctttgtaaactaatataaaagcatttagatcattactttagtattctaaacgctc 29
Query: 66 ttatattagtttacggaggga 86
|||||||||||||||||||||
Sbjct: 28 ttatattagtttacggaggga 8
Score = 60.0 bits (30), Expect = 5e-09
Identities = 70/82 (85%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctctt 67
|||||| |||||||||||||| | |||||||| || ||||||| || |||||| || ||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgctttt 67
Query: 68 atattagtttacggagggagta 89
|||||||||||| ||||||||
Sbjct: 68 atattagtttacaaagggagta 89
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 65.9 bits (33), Expect = 8e-11
Identities = 73/85 (85%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
||||| ||||||||||| ||||| | ||||||||| | ||||||||| ||||| |||
Sbjct: 88 actccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgctc 29
Query: 66 ttatattagtttacggagggagtat 90
|||||||| ||||||||||||||||
Sbjct: 28 ttatattaatttacggagggagtat 4
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaatctct 66
||||||||||||||||||||||| | |||||||| | |||| |||| || || || |
Sbjct: 6 actccctctgtaaactaatataagagtgtttagataactaaaatagt-tctaaacgctat 64
Query: 67 tatattagtttacggagggagta 89
|||||||||||||||||||||||
Sbjct: 65 tatattagtttacggagggagta 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 63 ctcttatattagtttacggagggagta 89
||||||||||||||||| |||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttaga 40
|||||||| |||||||||||||| | ||||||||
Sbjct: 86 actccctccgtaaactaatataatagcgtttaga 53
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
|||||||||||||| |||||||| | ||||| ||| | |||| ||||| ||||| |||
Sbjct: 6 actccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgctc 65
Query: 66 ttatattagtttacggagg 84
|||||||||||||||||||
Sbjct: 66 ttatattagtttacggagg 84
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 72/85 (84%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
|||||||| ||||| ||||||| | | ||||||| | |||||||||| || ||| |||
Sbjct: 88 actccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgctc 29
Query: 66 ttatattagtttacggagggagtat 90
|||||||||||||| ||||||||||
Sbjct: 28 ttatattagtttacagagggagtat 4
Score = 48.1 bits (24), Expect = 2e-05
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctc 65
||||||||||||||||||||||| | | || |||| | || ||||| |||||| |||
Sbjct: 6 actccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgctc 65
Query: 66 ttatattagtttacggagggagta 89
||||||| |||||||||||||||
Sbjct: 66 ttatatttctttacggagggagta 89
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 56.0 bits (28), Expect = 8e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtg 54
||||||||||||||||||||||| | | ||||||| | ||||||||||
Sbjct: 6 actccctctgtaaactaatataagagcttttagatcactaaagtagtg 53
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 63 ctcttatattagtttacggagggagta 89
||||||||||||||||| |||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 63 ctcttatattagtttacggagggagtat 90
||||||||||||||||||||||||||||
Sbjct: 108 ctcttatattagtttacggagggagtat 135
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttagattattaaagtagtgtcctaaa-tctc 65
|||||||| |||||||||||||| | | ||||||| |||||| ||||| ||||| |||
Sbjct: 133 actccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgctc 74
Query: 66 ttatattagt 75
||||||||||
Sbjct: 73 ttatattagt 64
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataaaaacgtttag 39
||||||||||||||||||||||| | |||||||
Sbjct: 6 actccctctgtaaactaatataagagcgtttag 38
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 63 ctcttatattagtttacggagggagta 89
||||||||||||||||| |||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 63 ctcttatattagtttacggagggagta 89
|||||||||||||||||||||||||||
Sbjct: 36 ctcttatattagtttacggagggagta 62
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 63 ctcttatattagtttacggagggagtatta 92
||||||||||||||||| ||||||||||||
Sbjct: 31 ctcttatattagtttacagagggagtatta 2
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataa 29
|||||||||||||||||||||||
Sbjct: 6 actccctctgtaaactaatataa 28
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 71/84 (84%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaaacgtttagattattaa--agtagtgtcctaaatc-tc 65
||||||||||||||||||||| | | ||||||| | ||| ||||||| ||||| ||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaaaggtc 67
Query: 66 ttatattagtttacggagggagta 89
|||||||||||||| |||||||||
Sbjct: 68 ttatattagtttacagagggagta 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataa 29
|||||||||||||||||||||||
Sbjct: 90 actccctctgtaaactaatataa 68
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 64/76 (84%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 16 gtaaactaatataaaaacgtttagattattaaagtagtgtcctaaat-ctcttatattag 74
|||||| ||||||| | |||| |||| | | |||||||| |||||| ||||||||||
Sbjct: 79 gtaaacaaatataagagcgttcagatcactcaagtagtgacctaaacgctcttatatttc 20
Query: 75 tttacggagggagtat 90
||||||||||||||||
Sbjct: 19 tttacggagggagtat 4
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 ctcttatattagtttacggagggagta 89
||||||||||||||||| |||||||||
Sbjct: 70 ctcttatattagtttacagagggagta 96
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataa 29
|||||||||||||||||||||||
Sbjct: 95 actccctctgtaaactaatataa 73
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 63 ctcttatattagtttacggagggagta 89
||||||||||||||||| |||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataa 29
|||||||||||||||||||||||
Sbjct: 6 actccctctgtaaactaatataa 28
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 ctcttatattagtttacggagggagta 89
||||||||||||||||| |||||||||
Sbjct: 48 ctcttatattagtttaccgagggagta 74
