miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 109 bits (55), Expect = 8e-24
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataactaaaagtgctttaaatgcttt 75
|||||||||||||||||||||||||||||||||||||||||||| | | |||| ||| |
Sbjct: 5 tactccctctgtaaactaatataaaagtgtttagataactaaaatagttctaaacgctct 64
Query: 76 tatattagtttacggagagagta 98
||||||||||||||||| |||||
Sbjct: 65 tatattagtttacggagggagta 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataaaagtgtttaga 50
||||||||| |||||||||||||| || |||||||
Sbjct: 87 tactccctccgtaaactaatataagagcgtttaga 53
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 101 bits (51), Expect = 2e-21
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataactaaaagtgctttaaatgcttt 75
|||||||||||||||||||||||| ||||||||||||||||||| | | |||| ||| |
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagataactaaaatagttctaaacgctat 64
Query: 76 tatattagtttacggagagagta 98
||||||||||||||||| |||||
Sbjct: 65 tatattagtttacggagggagta 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataaaagtgtttaga 50
||||||||| |||||||||||||| || |||||||
Sbjct: 87 tactccctccgtaaactaatataatagcgtttaga 53
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 93.7 bits (47), Expect = 5e-19
Identities = 71/78 (91%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 13 tactactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaat 70
||||||||||||||||||||||||||| || |||||||| |||||| |||| | |||||
Sbjct: 2 tactactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaat 61
Query: 71 gcttttatattagtttac 88
||||||||||||||||||
Sbjct: 62 gcttttatattagtttac 79
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataaaag 42
||||||| |||||||||||||||||||
Sbjct: 89 tactccccctgtaaactaatataaaag 63
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 68/76 (89%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgct 73
|||||||||||||||||||||||| ||| ||||||| |||||| |||| | ||||||||
Sbjct: 5 tactccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgct 64
Query: 74 tttatattagtttacg 89
|||||||||||||||
Sbjct: 65 cttatattagtttacg 80
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 77.8 bits (39), Expect = 3e-14
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 21 cctctgtaaactaatataaaagtgtttagataactaa-aagtgctttaaatgcttttata 79
|||||||||||||||||||||| ||||||| ||||| |||| | |||||||| |||||
Sbjct: 9 cctctgtaaactaatataaaagcatttagatcactaagtagtgatctaaatgctcttata 68
Query: 80 ttagtttacggagagagta 98
||||||||||||| |||||
Sbjct: 69 ttagtttacggagggagta 87
Score = 63.9 bits (32), Expect = 4e-10
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 14 actactccctctgtaaactaatataaaagtgtttagataactaaa-agtgctttaaatgc 72
||||||||||| |||||||||||||| || ||||||| |||| |||| | |||||||
Sbjct: 89 actactccctccgtaaactaatataagagcatttagatcactacttagtgatctaaatgc 30
Query: 73 ttttatattagtttac 88
||||||||||||||||
Sbjct: 29 ttttatattagtttac 14
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 74/85 (87%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgct 73
|||||||||| ||||| ||||||| ||||||||||| |||||| |||| | |||| |||
Sbjct: 5 tactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgct 64
Query: 74 tttatattagtttacggagagagta 98
|||||||||||||||||| |||||
Sbjct: 65 cttatattagtttacggagggagta 89
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 14 actactccctctgtaaactaatataaaagtgtttaga 50
||||||||||| |||||||||||||| || |||||||
Sbjct: 91 actactccctccgtaaactaatataagagcgtttaga 55
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 74/85 (87%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgct 73
||||||||||||||||||||||||||| |||| || |||||| | || ||||||| |
Sbjct: 5 tactccctctgtaaactaatataaaagcatttaaattactaaaataatgttttaaataat 64
Query: 74 tttatattagtttacggagagagta 98
||||||||||||||||||| |||||
Sbjct: 65 tttatattagtttacggagggagta 89
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 64 tttaaatgcttttatattagtttacggagagagta 98
||||||||||||||||||||||||| ||| |||||
Sbjct: 39 tttaaatgcttttatattagtttacagagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataaaa 41
||||||||| ||||||||||||||||
Sbjct: 89 tactccctccgtaaactaatataaaa 64
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 75/87 (86%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataacta--aaagtgctttaaatgct 73
|||||||||||||||||||||||| ||||||||||| |||| ||| |||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagatcactagtttagtaatttaaaaact 64
Query: 74 tttatattagtttacggagagagtata 100
||||||||||||||| ||| |||||||
Sbjct: 65 tttatattagtttacagagggagtata 91
Score = 67.9 bits (34), Expect = 3e-11
Identities = 73/85 (85%), Gaps = 2/85 (2%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgct 73
|||||||||||||||||||||||||||| |||| || |||||| |||| | |||| ||
Sbjct: 89 tactccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacact 30
Query: 74 tttatattagtttacggagagagta 98
|||||||||||||| ||| |||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 69.9 bits (35), Expect = 7e-12
Identities = 74/86 (86%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 15 ctactccctctgtaaactaatataaaagtgtttagataacta--aaagtgctttaaatgc 72
|||||||||| |||||||||||||| ||||||||||| |||| | || |||||||||
Sbjct: 4 ctactccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgc 63
Query: 73 ttttatattagtttacggagagagta 98
| |||||||||||||| ||| |||||
Sbjct: 64 tcttatattagtttaccgagggagta 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 72/87 (82%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 14 actactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatg 71
||||||||||| |||||||||||||| || |||| || | |||| |||| | ||||
Sbjct: 91 actactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaaca 32
Query: 72 cttttatattagtttacggagagagta 98
|| |||||||||||||||||| |||||
Sbjct: 31 ctcttatattagtttacggagggagta 5
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 67.9 bits (34), Expect = 3e-11
Identities = 73/85 (85%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataacta--aaagtgctttaaatgct 73
||||||||| |||||||||||||| ||||||||||| |||| |||| | |||||| |
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgtt 64
Query: 74 tttatattagtttacggagagagta 98
||||||||||||||| ||| |||||
Sbjct: 65 tttatattagtttacagagggagta 89
Score = 60.0 bits (30), Expect = 6e-09
Identities = 72/85 (84%), Gaps = 2/85 (2%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgct 73
|||||||||||||||||||||||||| ||||||| |||||| ||| | |||| ||
Sbjct: 89 tactccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacact 30
Query: 74 tttatattagtttacggagagagta 98
|||||||||||||||||| |||||
Sbjct: 29 cttatattagtttacggagggagta 5
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 67.9 bits (34), Expect = 3e-11
Identities = 73/85 (85%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgct 73
|||||||||||||||||||||||| || ||||||| |||||| ||| | |||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 74 tttatattagtttacggagagagta 98
|||||||||||||||||| |||||
Sbjct: 65 cttatattagtttacggagggagta 89
Score = 60.0 bits (30), Expect = 6e-09
Identities = 72/85 (84%), Gaps = 2/85 (2%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataacta--aaagtgctttaaatgct 73
||||||||| |||||||||||||| || |||||||| |||| |||| | ||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgct 30
Query: 74 tttatattagtttacggagagagta 98
|||||||||||||| ||| |||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 65.9 bits (33), Expect = 1e-10
Identities = 63/72 (87%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgct 73
|||||||||||||||||||||||| || |||||||| |||||| |||| | |||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 74 tttatattagtt 85
|||||||||||
Sbjct: 65 cttatattagtt 76
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 65.9 bits (33), Expect = 1e-10
Identities = 69/80 (86%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 15 ctactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgc 72
|||||||||||||||| |||||||| || |||| ||| |||||| |||| | |||| ||
Sbjct: 4 ctactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgc 63
Query: 73 ttttatattagtttacggag 92
| ||||||||||||||||||
Sbjct: 64 tcttatattagtttacggag 83
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 15 ctactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgc 72
||||||||||||||||||||||||| || | |||||| |||||| |||| | ||| ||
Sbjct: 90 ctactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgc 31
Query: 73 ttttatattagtttacggagagagtat 99
| |||||||||||||| ||| ||||||
Sbjct: 30 tcttatattagtttacagagggagtat 4
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataacta 56
|||||||||||||||||||||||| || | |||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcacta 45
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 65/75 (86%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgct 73
||||||||| |||||||||||||| || |||||| | |||||| |||| | ||||||||
Sbjct: 5 tactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgct 64
Query: 74 tttatattagtttac 88
||||||||||||||
Sbjct: 65 cttatattagtttac 79
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 14 actactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatg 71
||||||||||| |||||||||||||| || ||||||| |||||| |||| | |||| |
Sbjct: 91 actactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacg 32
Query: 72 cttttatattagtttacggagagagta 98
|| |||||||||||||| ||| |||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
Score = 60.0 bits (30), Expect = 6e-09
Identities = 72/85 (84%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataacta--aaagtgctttaaatgct 73
|||||||||||||||||||||||| || |||||||| |||| ||| | |||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgct 64
Query: 74 tttatattagtttacggagagagta 98
|||||||||||||||||| |||||
Sbjct: 65 cttatattagtttacggagggagta 89
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 73/86 (84%), Gaps = 2/86 (2%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataactaaaa--gtgctttaaatgct 73
||||||||| ||||||||||||| || ||||||| | ||||| ||| | ||||||||
Sbjct: 89 tactccctccataaactaatataagagcatttagattattaaaatagtgatctaaatgct 30
Query: 74 tttatattagtttacggagagagtat 99
||||||||||||||| ||| ||||||
Sbjct: 29 tttatattagtttacagagggagtat 4
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataacta 56
||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcacta 45
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 72/85 (84%), Gaps = 2/85 (2%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgct 73
|||||||||||||||||||||||| | |||||||| |||| ||| | |||| |||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgct 30
Query: 74 tttatattagtttacggagagagta 98
||||||||||||||||||| |||||
Sbjct: 29 tttatattagtttacggagggagta 5
Score = 60.0 bits (30), Expect = 6e-09
Identities = 72/85 (84%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgct 73
||||||||| ||||||||||||||||| ||||||| |||||| |||| | |||| | |
Sbjct: 5 tactccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgtt 64
Query: 74 tttatattagtttacggagagagta 98
|||||||||||||| ||| |||||
Sbjct: 65 cttatattagtttacagagggagta 89
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 60.0 bits (30), Expect = 6e-09
Identities = 73/86 (84%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 14 actactccctctgtaaactaatataaaagtgtttagataactaa-aagtgctttaaatgc 72
|||||||||| |||||||||||||||| |||||||| | ||| |||| | |||||||
Sbjct: 3 actactcccttcataaactaatataaaagcgtttagatcattaagtagtgatctaaatgc 62
Query: 73 ttttatattagtttacggagagagta 98
| |||||||||||||| ||| |||||
Sbjct: 63 tcttatattagtttacagagggagta 88
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataacta 56
|||||||||||||||||||||||| || ||||||| ||||
Sbjct: 88 tactccctctgtaaactaatataagagcatttagatcacta 48
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 62/72 (86%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 19 tccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgctttt 76
|||||| |||||||||||||| || ||||||| |||||| | || | |||||||||||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgctttt 67
Query: 77 atattagtttac 88
||||||||||||
Sbjct: 68 atattagtttac 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataaaagtgtttagat 51
|||||||| |||||||||||||||||| |||||||
Sbjct: 89 tactccctttgtaaactaatataaaagcatttagat 54
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgttt 47
|||||||||||||||||||||||| |||||||
Sbjct: 5 tactccctctgtaaactaatataagagtgttt 36
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 73/87 (83%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 15 ctactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgc 72
||||||| ||||||||||| ||||| || |||||||| |||||| ||| | |||| ||
Sbjct: 90 ctactccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgc 31
Query: 73 ttttatattagtttacggagagagtat 99
| |||||||| ||||||||| ||||||
Sbjct: 30 tcttatattaatttacggagggagtat 4
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 17 actccctctgtaaactaatataaaagtgtttagataactaaaa 59
|||||||| |||||||||||||| || |||||||| |||||||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcactaaaa 46
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataactaaa 58
|||||||||||||||||||||||| || ||||||| ||||||
Sbjct: 5 tactccctctgtaaactaatataagagcttttagatcactaaa 47
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 72/86 (83%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgct 73
||||||||| |||||||||||||| | ||||||| ||| || |||| | ||||||||
Sbjct: 5 tactccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgct 64
Query: 74 tttatattagtttacggagagagtat 99
||||||||||||| |||| ||||||
Sbjct: 65 cttatattagtttatggagggagtat 90
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 14 actactccctctgtaaactaatataaaagtgtttagataacta 56
||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct: 91 actactccctccgtaaagaaatataagagtgtttagataacta 49
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataaaagtgtttag 49
|||||||||||||||||||||||| || ||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttag 38
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 66 taaatgcttttatattagtttacggagagagtat 99
|||||||| |||||||||||||||||| ||||||
Sbjct: 102 taaatgctcttatattagtttacggagggagtat 135
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 50.1 bits (25), Expect = 6e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 15 ctactccctctgtaaactaatataaaagtgtttagataactaaaa 59
|||| |||||||||||||||||||| || ||||||| |||||||
Sbjct: 4 ctaccccctctgtaaactaatataagagcatttagatcactaaaa 48
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataa 39
||||||||||||||||||||||||
Sbjct: 96 tactccctctgtaaactaatataa 73
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataacta 56
||||||||||||||| ||||||| ||||||||||| ||||
Sbjct: 87 tactccctctgtaaagaaatataagagtgtttagatcacta 47
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataa 39
||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataa 28
Score = 46.1 bits (23), Expect = 1e-04
Identities = 71/86 (82%), Gaps = 2/86 (2%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgct 73
||||||||| ||||| ||||||| || ||||||| |||||| |||| | | ||||||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgct 30
Query: 74 tttatattagtttacggagagagtat 99
|||||||||||||| ||| ||||||
Sbjct: 29 cttatattagtttacagagggagtat 4
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataa 39
||||||||||||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataa 66
Score = 46.1 bits (23), Expect = 1e-04
Identities = 68/82 (82%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 19 tccctctgtaaactaatataaaagtgtttagataactaaa--agtgctttaaatgctttt 76
||||||||||||||||||||| | ||||||| |||||| |||| | |||| | | ||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 67
Query: 77 atattagtttacggagagagta 98
|||||||||||| ||| |||||
Sbjct: 68 atattagtttacagagggagta 89
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 72/87 (82%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 13 tactactccctctgtaaactaatataaaagtgtttagataactaaaa--gtgctttaaat 70
||||| ||||| ||||||||||||||| || ||| |||| | ||||| ||| | ||||
Sbjct: 2 tactattccctttgtaaactaatataagagcgttgagatcattaaaattgtgatctaaac 61
Query: 71 gcttttatattagtttacggagagagt 97
|| |||||||||||||||||| ||||
Sbjct: 62 tctcttatattagtttacggagggagt 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 17 actccctctgtaaactaatataaaagtgtttagat 51
|||||||| |||||||||||||| || ||||||||
Sbjct: 88 actccctccgtaaactaatataagagagtttagat 54
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataa 39
||||||||||||||||||||||||
Sbjct: 91 tactccctctgtaaactaatataa 68
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataa 39
||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataa 28
