miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
|||||||||||||||||||||| || | ||||||||||| ||||| ||| |||||||| |
Sbjct: 7 ctccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgcttt 66
Query: 78 tatattaatttacag 92
||||||| |||||||
Sbjct: 67 tatattagtttacag 81
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
|||||||||||||||||||||| || |||||||| |||| ||||| | | ||| |||||
Sbjct: 87 ctccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgctct 28
Query: 78 tatattaatttacagagg 95
||||||| ||||||||||
Sbjct: 27 tatattagtttacagagg 10
Score = 60.0 bits (30), Expect = 7e-09
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
|||||||||||||||||||||| || |||||||| |||| ||| | | ||| |||||
Sbjct: 7 ctccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgctct 66
Query: 78 tatattaatttacagagg 95
||||||| ||||||||||
Sbjct: 67 tatattagtttacagagg 84
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
|||||||||||||||||||||| || ||||||||||| | ||| ||| ||||||||||
Sbjct: 7 ctccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgctct 66
Query: 78 tatattaatttac 90
||||||| |||||
Sbjct: 67 tatattagtttac 79
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 67.9 bits (34), Expect = 3e-11
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
||||||| |||||||||||||| || | ||||||||||| ||| | | ||||||||||
Sbjct: 87 ctccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgctct 28
Query: 78 tatattaatttacagagg 95
||||||| ||||||||||
Sbjct: 27 tatattagtttacagagg 10
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataa 39
||||||||||||||||||||||
Sbjct: 7 ctccctctgtaaactaatataa 28
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
||||||| |||||||||||||| || | |||| | |||| | ||| | | ||||||||||
Sbjct: 7 ctccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgctct 66
Query: 78 tatattaatttacagagga 96
||||||| |||||||||||
Sbjct: 67 tatattagtttacagagga 85
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 61.9 bits (31), Expect = 2e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
|||||||||||||||||||||| || | |||||| |||| ||||| | | |||| |||||
Sbjct: 7 ctccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgctct 66
Query: 78 tatatta 84
|||||||
Sbjct: 67 tatatta 73
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 61.9 bits (31), Expect = 2e-09
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 21 cctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctcttat 80
|||||||||||||||||||||| |||||| |||| ||||| | | |||||||||||||
Sbjct: 9 cctctgtaaactaatataaaagcatttagatcacta-agtagtgatctaaatgctcttat 67
Query: 81 attaatttacagagg 95
|||| ||||| ||||
Sbjct: 68 attagtttacggagg 82
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 68 taaatgctcttatattaatttacagaggagtac 100
|||||||| |||||||| |||||||||||||||
Sbjct: 36 taaatgcttttatattagtttacagaggagtac 4
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 61.9 bits (31), Expect = 2e-09
Identities = 67/78 (85%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
||||||||||||||||||||||||| | |||||| |||| | || ||| |||| |||||
Sbjct: 7 ctccctctgtaaactaatataaaagtgtttagataactaaaata--gttctaaacgctct 64
Query: 78 tatattaatttacagagg 95
||||||| ||||| ||||
Sbjct: 65 tatattagtttacggagg 82
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 60.0 bits (30), Expect = 7e-09
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
||||||| ||||||||||||||||| | ||||| ||||| | ||| | | |||| | |||
Sbjct: 7 ctccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgttct 66
Query: 78 tatattaatttacagagg 95
||||||| ||||||||||
Sbjct: 67 tatattagtttacagagg 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 18 ctccctctgtaaactaatataa 39
||||||||||||||||||||||
Sbjct: 87 ctccctctgtaaactaatataa 66
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 60.0 bits (30), Expect = 7e-09
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
||||||||||||||||||||||||| ||| ||||||| | ||| | | |||| ||||
Sbjct: 87 ctccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacactct 28
Query: 78 tatattaatttacagagg 95
||||||| ||||||||||
Sbjct: 27 tatattagtttacagagg 10
Score = 52.0 bits (26), Expect = 2e-06
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
|||||||||||||||||||||| || | |||||| ||||| ||| |||||| || |
Sbjct: 7 ctccctctgtaaactaatataagagtgtttagatcactagtttagtaatttaaaaacttt 66
Query: 78 tatattaatttacagagg 95
||||||| ||||||||||
Sbjct: 67 tatattagtttacagagg 84
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 60.0 bits (30), Expect = 7e-09
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
||||||| |||||||||||||| || | ||||| ||||| | ||| | | |||| |||||
Sbjct: 87 ctccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgctct 28
Query: 78 tatattaatttacagagg 95
||||||| ||||||||||
Sbjct: 27 tatattagtttacagagg 10
Score = 52.0 bits (26), Expect = 2e-06
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
|||||||||||||||||||||| || | |||||| |||| ||| || |||| |||||
Sbjct: 7 ctccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgctct 66
Query: 78 tatattaatttacagagg 95
||||||| ||||| ||||
Sbjct: 67 tatattagtttacggagg 84
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 58.0 bits (29), Expect = 3e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 27 taaactaatataaaagagcttagattactagagtagggttttaaatgctcttatattaat 86
|||||||||||||||| | |||||| | || ||||| | | ||||||||||||||||| |
Sbjct: 16 taaactaatataaaagcgtttagatcatta-agtagtgatctaaatgctcttatattagt 74
Query: 87 ttacagagg 95
|||||||||
Sbjct: 75 ttacagagg 83
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 18 ctccctctgtaaactaatataa 39
||||||||||||||||||||||
Sbjct: 86 ctccctctgtaaactaatataa 65
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
||||||| |||||||||||||| | |||||||||| ||||| ||| ||||||||||
Sbjct: 7 ctccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgctct 66
Query: 78 tatattaattta 89
||||||| ||||
Sbjct: 67 tatattagttta 78
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 73/87 (83%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
||||||| |||||||||||||| || | ||||||||||| ||| | | |||||| | |
Sbjct: 7 ctccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgtttt 66
Query: 78 tatattaatttacaga-ggagtacaaa 103
||||||| |||||||| ||||||||||
Sbjct: 67 tatattagtttacagagggagtacaaa 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 18 ctccctctgtaaactaatataaaa 41
||||||||||||||||||||||||
Sbjct: 87 ctccctctgtaaactaatataaaa 64
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
||||||| |||||||||||||| || | |||||| |||| || | ||||||||||||
Sbjct: 7 ctccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgctct 66
Query: 78 tatattaatttacagagg 95
||||||| ||||| ||||
Sbjct: 67 tatattagtttaccgagg 84
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
|||||||| ||||| ||||||| || | |||||| |||| | ||| ||| |||| |||||
Sbjct: 7 ctccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgctct 66
Query: 78 tatattaatttacagagg 95
||||||| ||||| ||||
Sbjct: 67 tatattagtttacggagg 84
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
||||||||||||||||||||||||| ||| ||||||| | || ||||||||| | |
Sbjct: 7 ctccctctgtaaactaatataaaagcatttaaattactaaaataatgttttaaataattt 66
Query: 78 tatattaatttacagagg 95
||||||| ||||| ||||
Sbjct: 67 tatattagtttacggagg 84
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 65/78 (83%)
Strand = Plus / Minus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
|||| ||||||||||| ||||| || | |||||| |||| ||||| | |||| |||||
Sbjct: 87 ctccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgctct 28
Query: 78 tatattaatttacagagg 95
||||||||||||| ||||
Sbjct: 27 tatattaatttacggagg 10
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 19 tccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctctt 78
|||||| |||||||||||||| || | ||||| ||||| |||| | | |||||||| ||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgctttt 67
Query: 79 atattaatttaca 91
|||||| ||||||
Sbjct: 68 atattagtttaca 80
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 19 tccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctctt 78
||||||||||||||||||||| | |||||| |||| ||||| | | |||| | ||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 67
Query: 79 atattaatttacagagg 95
|||||| ||||||||||
Sbjct: 68 atattagtttacagagg 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 18 ctccctctgtaaactaatataa 39
||||||||||||||||||||||
Sbjct: 87 ctccctctgtaaactaatataa 66
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataaaag 42
|||||||||||||||||||||||||
Sbjct: 7 ctccctctgtaaactaatataaaag 31
Score = 44.1 bits (22), Expect = 4e-04
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
||||||| ||||||||||||| || |||||||| || | ||| | | |||||||| |
Sbjct: 87 ctccctccataaactaatataagagcatttagattattaaaatagtgatctaaatgcttt 28
Query: 78 tatattaatttacagagg 95
||||||| ||||||||||
Sbjct: 27 tatattagtttacagagg 10
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 68 taaatgctcttatattaatttacagagg 95
||||||||||||||||| ||||||||||
Sbjct: 37 taaatgctcttatattagtttacagagg 10
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 18 ctccctctgtaaactaatataa 39
||||||||||||||||||||||
Sbjct: 94 ctccctctgtaaactaatataa 73
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataaaagagcttagattacta 56
|||||||||||||||||||||| || | |||||| ||||
Sbjct: 7 ctccctctgtaaactaatataagagtgtttagataacta 45
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 13 ttctgctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaat 72
|||| ||||||||||||| |||||||| || | || ||| |||| | ||| | | ||||
Sbjct: 2 ttctactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaac 61
Query: 73 gctcttatattaatttacagagg 95
|||||||||||| ||||| ||||
Sbjct: 62 gctcttatattagtttacggagg 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 73 gctcttatattaatttacagagg 95
|||||||||||||||||||||||
Sbjct: 32 gctcttatattaatttacagagg 10
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 18 ctccctctgtaaactaatataaaagagcttagattactagagtagggttttaaatgctct 77
||||||| |||||||||||||| || | |||||| |||| | ||| | | ||| ||||
Sbjct: 87 ctccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactct 28
Query: 78 tatattaatttacagagg 95
||||||||||||| ||||
Sbjct: 27 tatattaatttacggagg 10
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataa 39
||||||||||||||||||||||
Sbjct: 7 ctccctctgtaaactaatataa 28
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 70 aatgctcttatattaatttacagagg 95
||||||||||||||| ||||||||||
Sbjct: 35 aatgctcttatattagtttacagagg 10
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 18 ctccctctgtaaactaatataaaagagcttagat 51
||||||| |||||||||||||| |||| ||||||
Sbjct: 87 ctccctccgtaaactaatataagagagtttagat 54
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 18 ctccctctgtaaactaatataa 39
||||||||||||||||||||||
Sbjct: 89 ctccctctgtaaactaatataa 68
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataa 39
||||||||||||||||||||||
Sbjct: 7 ctccctctgtaaactaatataa 28
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataa 39
||||||||||||||||||||||
Sbjct: 7 ctccctctgtaaactaatataa 28
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataa 39
||||||||||||||||||||||
Sbjct: 7 ctccctctgtaaactaatataa 28
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ctccctctgtaaactaatataa 39
||||||||||||||||||||||
Sbjct: 7 ctccctctgtaaactaatataa 28
