miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ313099.1/1401-1309 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 99.6 bits (50), Expect = 1e-20
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 59 tccctctgtaaacttatataagatgttttaggttactactttagtgacctaagatgtctt 118
||||||||||||||| |||||||||||||||| |||||||||||| ||||| || ||||
Sbjct: 8 tccctctgtaaacttttataagatgttttaggccactactttagtggcctaaaatttctt 67
Query: 119 a-aaaagtttatagagggagta 139
| ||||||||||||||||||||
Sbjct: 68 ataaaagtttatagagggagta 89
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 58.0 bits (29), Expect = 5e-08
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 59 tccctctgtaaacttatataagatgttttaggttactactttagtgacctaagatgtctt 118
|||||||||||||| |||||||| |||||| | ||||||||||||| |||| | |||||
Sbjct: 86 tccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggtctt 27
Query: 119 a 119
|
Sbjct: 26 a 26
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 tattccctctgtaaacttatataaga 81
||||||||||||||||| ||||||||
Sbjct: 5 tattccctctgtaaactaatataaga 30
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 48.1 bits (24), Expect = 5e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 59 tccctctgtaaacttatataagatgttttaggttactactttagtgacctaa 110
|||||| ||||||| |||||||| ||||| ||||||||||||||| ||||
Sbjct: 8 tccctccgtaaactaatataagagtgtttagattactactttagtgatctaa 59
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 7e-04
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 61 cctctgtaaacttatataagatgttttaggttactactttagtgacctaa 110
|||||||||||| |||||||| ||||| | |||| |||||||||||||
Sbjct: 84 cctctgtaaactaatataagagcatttagatcactattttagtgacctaa 35
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 tattccctctgtaaacttatataaga 81
||||||||||||||||| ||||||||
Sbjct: 5 tattccctctgtaaactaatataaga 30
