miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 60.0 bits (30), Expect = 9e-09
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 12 atactctctccgtcccagaatncttgtcttagatttggctacatataaatgtattctatc 71
|||||| |||||||||| | | ||||||||||||||| ||| |||| ||||||| ||
Sbjct: 4 atactccctccgtcccaaacttcttgtcttagatttgtctagatatgaatgtatgtagtc 63
Query: 72 acgtttgggtatttaga 88
|||||| ||||||||||
Sbjct: 64 acgttttggtatttaga 80
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 54.0 bits (27), Expect = 6e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 12 atactctctccgtcccagaatncttgtcttagatttggctacatat 57
|||||| |||||||||| ||| ||||||||||||||| ||| ||||
Sbjct: 132 atactccctccgtcccaaaattcttgtcttagatttgtctagatat 87
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 50.1 bits (25), Expect = 9e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 13 tactctctccgtcccagaatncttgtcttagatttg 48
||||| |||||||||| ||| |||||||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttagatttg 40
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 50.1 bits (25), Expect = 9e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 10 ttatactctctccgtcccagaatncttgtcttagatttggctacatataaatgtat 65
|||||||| |||||| ||| ||| ||||||||||||||| || |||| |||||||
Sbjct: 2 ttatactccctccgttccaaaattcttgtcttagatttgtttagatatgaatgtat 57
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 48.1 bits (24), Expect = 4e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 13 tactctctccgtcccagaatncttgtcttagattt 47
||||| |||||||||| ||| ||||||||||||||
Sbjct: 101 tactccctccgtcccaaaattcttgtcttagattt 67
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 48.1 bits (24), Expect = 4e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 23 gtcccagaatncttgtcttagatttggctacatataaatgtat 65
|||||| ||| ||||||||||||||| ||| |||| |||||||
Sbjct: 15 gtcccaaaattcttgtcttagatttgtctaaatatgaatgtat 57
Score = 46.1 bits (23), Expect = 1e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 tactctctccgtcccagaatncttgtctta 42
|||||||||||||||| ||| |||||||||
Sbjct: 131 tactctctccgtcccaaaattcttgtctta 102
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 12 atactctctccgtcccagaatncttgtcttagatttggctacatat 57
|||||| |||||||| | ||| ||||||||||||||| ||| ||||
Sbjct: 4 atactccctccgtcctaaaattcttgtcttagatttgtctagatat 49
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 12 atactctctccgtcccagaatncttgtcttagat 45
|||||| |||||||||| ||| ||||||||||||
Sbjct: 133 atactccctccgtcccaaaattcttgtcttagat 100
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 12 atactctctccgtcccagaatncttgtcttagatttg 48
|||||| |||||||||| ||| || ||||||||||||
Sbjct: 132 atactccctccgtcccaaaattctngtcttagatttg 96
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 44.1 bits (22), Expect = 6e-04
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 13 tactctctccgtcccagaatncttgtcttagatttggctacatataaatgtat 65
||||| |||||||||| ||| |||||||||||||| || |||| |||||||
Sbjct: 5 tactccctccgtcccaaaattattgtcttagatttgtttagatatgaatgtat 57
>RF00906;MIR1122;AAAA02035395.1/16532-16668 39946:Oryza sativa
Indica Group
Length = 137
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 tatactctctccgtcccagaat 32
||||||||||||||||||||||
Sbjct: 135 tatactctctccgtcccagaat 114
