miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AADN02013953.1/12681-12597 9031:Gallus gallus
(chicken)
Length = 85
Score = 137 bits (69), Expect = 4e-32
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 18 ctaggaagaggtagtaggttgcatagttttcgggcagggattttgcccacaaggaggtaa 77
||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 1 ctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaaggaggtaa 60
Query: 78 ctatacgacctgctgcctttcttag 102
|||||| ||||||||||||||||||
Sbjct: 61 ctatacaacctgctgcctttcttag 85
>RF00027;let-7;AAVX01008163.1/128-212 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 101 bits (51), Expect = 2e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 24 agaggtagtaggttgcatagttttcgggcagggattttgcccacaaggaggtaactatac 83
||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct: 7 agaggtagtaggttgcatagtttgagggcagggattttgccccaaaggagataactatac 66
Query: 84 gacctgctgcctttc 98
||||||||||||||
Sbjct: 67 aacctgctgcctttc 81
>RF00027;let-7;ABRT010188166.1/5185-5269 9478:Tarsius syrichta
(Philippine tarsier)
Length = 85
Score = 81.8 bits (41), Expect = 2e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 26 aggtagtaggttgcatagttttcgggcagggattttgcccacaaggaggtaactatacga 85
|||| ||||||||||||||||| |||||| | ||||| |||| |||||||| ||||| ||
Sbjct: 9 aggttgtaggttgcatagttttagggcagcggttttgtccactaggaggtacctatatga 68
Query: 86 cctgctgcctttc 98
|||||||||||||
Sbjct: 69 cctgctgcctttc 81
>RF00027;let-7;AANU01121567.1/12811-12727 9544:Macaca mulatta
(rhesus monkey)
Length = 85
Score = 73.8 bits (37), Expect = 5e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 26 aggtagtaggttgcatagttttcgggcagggattttgcccacaaggaggtaactatacga 85
|||||||||||||| |||||| || |||||||||| |||||||||||||| |||| ||
Sbjct: 9 aggtagtaggttgcctagtttgaggacagggattttatccacaaggaggtaattatatga 68
Query: 86 cctgctgcc 94
|||||||||
Sbjct: 69 cctgctgcc 77
>RF00027;let-7;ABGA01101244.1/3837-3924 9601:Pongo abelii
(Sumatran orangutan)
Length = 88
Score = 58.0 bits (29), Expect = 3e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 26 aggtagtaggttgcatagttttcgggcagggattttgcccacaaggaggtaactatacga 85
||||||||||||||||||||| || |||||||||| |||| ||||| ||| |||| ||
Sbjct: 9 aggtagtaggttgcatagtttgaggacagggattttatccactaggagataattatatga 68
Query: 86 cctgc 90
|||||
Sbjct: 69 cctgc 73
>RF00027;let-7;AAGW01052945.1/1566-1484 9986:Oryctolagus cuniculus
(rabbit)
Length = 83
Score = 56.0 bits (28), Expect = 1e-07
Identities = 70/83 (84%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 18 ctaggaagaggtagtaggttgcatagttttcgggcagggattttgcccacaaggaggtaa 77
||||||||||| || ||| ||| |||| |||||| |||||||| |||||| ||||||
Sbjct: 1 ctaggaagaggcaggaggctgc--agttgcagggcagagattttgctcacaagaaggtaa 58
Query: 78 ctatacgacctgctgcctttctt 100
|| |||||||||| |||||||||
Sbjct: 59 ctctacgacctgcagcctttctt 81
>RF00027;let-7;ABDC01518424.1/1820-1902 30608:Microcebus murinus
(gray mouse lemur)
Length = 83
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 75 taactatacgacctgctgcctttcttag 102
||||||||| ||||||||||||||||||
Sbjct: 56 taactatacaacctgctgcctttcttag 83
>RF00027;let-7;AL162595.17/20369-20285 9606:Homo sapiens (human)
Length = 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 18 ctaggaagaggtagtaggttgcatagttttcgggcagggattttgcccac 67
||||||||||| | |||||||||||||| ||||||| ||||| |||||
Sbjct: 1 ctaggaagaggcaacaggttgcatagtttgagggcaggcatttttcccac 50
