miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;AADN02044957.1/857-794 9031:Gallus gallus
(chicken)
Length = 64
Score = 89.7 bits (45), Expect = 5e-18
Identities = 60/64 (93%), Gaps = 2/64 (3%)
Strand = Plus / Minus
Query: 9 ataaccgatttcaaatggtgctagacaaaaac--agactctgaacaccaggagaaatcgg 66
||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||
Sbjct: 64 ataaccgatttcaaatggtgctagacagaaactgagactctgaacaccaagagaaatcgg 5
Query: 67 tcag 70
||||
Sbjct: 4 tcag 1
>RF00074;mir-29;ABVD01453472.1/1046-987 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 60
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/58 (94%), Gaps = 3/58 (5%)
Strand = Plus / Minus
Query: 13 ccgatttcaaatggtgctagacaaaaacagactctgaacaccaggagaaatcggtcag 70
|||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 55 ccgatttcaa-tggtgctagacaaaa-cagactctga-caccaggagaaatcggtcag 1
>RF00074;mir-29;BAAF04011253.1/3876-3938 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 65.9 bits (33), Expect = 7e-11
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 10 taaccgatttcaaatggtgctagaca-aaaacagactctgaacaccaggagaaatcggtc 68
|||||||||||||||||||||||| | | ||| |||||||||||||| |||||||||||
Sbjct: 62 taaccgatttcaaatggtgctagaaacagaacggactctgaacaccaaaagaaatcggtc 3
Query: 69 a 69
|
Sbjct: 2 a 2
>RF00074;mir-29;AAWZ01025678.1/1955-1892 28377:Anolis carolinensis
(green anole)
Length = 64
Score = 54.0 bits (27), Expect = 3e-07
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Minus
Query: 9 ataaccgatttcaaatggtgctagaca-aaaac-agactctgaacaccaggagaaatcgg 66
||||||||||||||||||||||||| | | ||| |||||| ||||||||| ||||||| |
Sbjct: 64 ataaccgatttcaaatggtgctagaaagagaactagactccgaacaccagaagaaatcag 5
Query: 67 tca 69
|||
Sbjct: 4 tca 2
>RF00074;mir-29;BAAF04011924.1/411-473 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 10 taaccgatttcaaatggtgctagaca 35
||||||||||||||||||||||||||
Sbjct: 62 taaccgatttcaaatggtgctagaca 37
>RF00074;mir-29;AADN02039691.1/12626-12563 9031:Gallus gallus
(chicken)
Length = 64
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 9 ataaccgatttcaaatggtgctaga 33
|||||||||||||||||||||||||
Sbjct: 64 ataaccgatttcaaatggtgctaga 40
>RF00074;mir-29;BX323868.6/63999-64062 7955:Danio rerio
(zebrafish)
Length = 64
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 9 ataaccgatttcaaatggtgctaga 33
|||||||||||||||||||||||||
Sbjct: 64 ataaccgatttcaaatggtgctaga 40
>RF00074;mir-29;CAAB01003353.1/24980-24916 31033:Takifugu rubripes
Length = 65
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 9 ataaccgatttcaaatggtgctaga 33
|||||||||||||||||||||||||
Sbjct: 65 ataaccgatttcaaatggtgctaga 41
>RF00074;mir-29;BAAE01022609.1/1233-1169 8090:Oryzias latipes
(Japanese medaka)
Length = 65
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 9 ataaccgatttcaaatggtgctaga 33
|||||||||||||||||||||||||
Sbjct: 65 ataaccgatttcaaatggtgctaga 41
>RF00074;mir-29;AAVX01087182.1/157-94 7868:Callorhinchus milii
(ghost shark)
Length = 64
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 9 ataaccgatttcaaatggtgctaga 33
|||||||||||||||||||||||||
Sbjct: 64 ataaccgatttcaaatggtgctaga 40
>RF00074;mir-29;CAAE01015043.1/838981-839043 99883:Tetraodon
nigroviridis
Length = 63
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 taaccgatttcaaatggtgctaga 33
||||||||||||||||||||||||
Sbjct: 62 taaccgatttcaaatggtgctaga 39
>RF00074;mir-29;CAAB01004459.1/12691-12629 31033:Takifugu rubripes
Length = 63
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 taaccgatttcaaatggtgctaga 33
||||||||||||||||||||||||
Sbjct: 62 taaccgatttcaaatggtgctaga 39
>RF00074;mir-29;AANH01007454.1/2347-2415 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 12 accgatttcaaatggtgctagaca 35
||||||||||||||||||||||||
Sbjct: 64 accgatttcaaatggtgctagaca 41
>RF00074;mir-29;AAVX01097121.1/1868-1805 7868:Callorhinchus milii
(ghost shark)
Length = 64
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 taaccgatttcaaatggtgctaga 33
||||||||||||||||||||||||
Sbjct: 63 taaccgatttcaaatggtgctaga 40
>RF00074;mir-29;CR749762.6/80332-80264 7955:Danio rerio
(zebrafish)
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 52/61 (85%), Gaps = 3/61 (4%)
Strand = Plus / Minus
Query: 12 accgatttcaaatggtgctagacaaaaacag---actctgaacaccaggagaaatcggtc 68
|||||||||||||||||||||| ||| ||| |||||||||||||| |||||| |||
Sbjct: 64 accgatttcaaatggtgctagaaaaacccagtccactctgaacaccagaggaaatcagtc 5
Query: 69 a 69
|
Sbjct: 4 a 4
>RF00074;mir-29;AAVX01247987.1/1-62 7868:Callorhinchus milii
(ghost shark)
Length = 62
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 aaccgatttcaaatggtgctaga 33
|||||||||||||||||||||||
Sbjct: 62 aaccgatttcaaatggtgctaga 40
>RF00074;mir-29;AADN02039691.1/13652-13582 9031:Gallus gallus
(chicken)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 15 gatttcaaatggtgctagacaa 36
||||||||||||||||||||||
Sbjct: 63 gatttcaaatggtgctagacaa 42
>RF00074;mir-29;CAAB01004459.1/12967-12899 31033:Takifugu rubripes
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 accgatttcaaatggtgctaga 33
||||||||||||||||||||||
Sbjct: 64 accgatttcaaatggtgctaga 43
>RF00074;mir-29;BAAE01022609.1/1375-1305 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 15 gatttcaaatggtgctagacaa 36
||||||||||||||||||||||
Sbjct: 63 gatttcaaatggtgctagacaa 42
>RF00074;mir-29;BAAF04011924.1/258-326 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 accgatttcaaatggtgctaga 33
||||||||||||||||||||||
Sbjct: 64 accgatttcaaatggtgctaga 43
>RF00074;mir-29;AANH01007454.1/2589-2651 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 63
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 10 taaccgatttcaaatggtgctagac 34
||||||||||| |||||||||||||
Sbjct: 62 taaccgatttcgaatggtgctagac 38
>RF00074;mir-29;AAVX01119247.1/689-758 7868:Callorhinchus milii
(ghost shark)
Length = 70
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 15 gatttcaaatggtgctagaca 35
|||||||||||||||||||||
Sbjct: 62 gatttcaaatggtgctagaca 42
