miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00100;7SK;AL611982.26/127743-128050 10090:Mus musculus (house
mouse)
Length = 308
Score = 60.0 bits (30), Expect = 7e-09
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 66 aactcgcagagatctgcctgcctctgctttctgagtgctgggatta 111
||||| |||||||||||||| || ||| ||||||||||||||||||
Sbjct: 307 aactcacagagatctgcctggctttgccttctgagtgctgggatta 262
>RF01942;mir-1937;CAAA01214895.1/357-468 10090:Mus musculus (house
mouse)
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 44 tctgtagaccaggctggcctcgaact 69
|||||||||||||||||||| |||||
Sbjct: 4 tctgtagaccaggctggccttgaact 29
>RF00017;Metazoa_SRP;ABQO010372832.1/17-303 9315:Macropus eugenii
(tammar wallaby)
Length = 287
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 102 gctgggattaaaggaatgtgccacca 127
|||||||||| |||||||||||||||
Sbjct: 34 gctgggattataggaatgtgccacca 9
>RF00017;Metazoa_SRP;ABGA01397540.1/2954-3235 9601:Pongo abelii
(Sumatran orangutan)
Length = 282
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 102 gctgggattaaaggaatgtgccacca 127
|||||||||| |||||||||||||||
Sbjct: 168 gctgggattacaggaatgtgccacca 143
>RF00100;7SK;CAAA01155083.1/245-554 10090:Mus musculus (house mouse)
Length = 310
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/45 (88%), Gaps = 2/45 (4%)
Strand = Plus / Minus
Query: 73 agagatctgcctgc--ctctgctttctgagtgctgggattaaagg 115
|||||||||||||| |||||| | ||||||||| ||||||||||
Sbjct: 304 agagatctgcctgcctctctgcctcctgagtgctaggattaaagg 260
